Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9c03
         (664 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    24   1.3  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   1.7  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    23   1.7  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   9.0  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 133 VEPYSPKSSPRGARSPVVSRQDSSGTLKTTISL 231
           + P S + S  G R+P++SR     T+K TI++
Sbjct: 238 LRPRSSQKSAPGKRTPLISRA-KINTVKQTIAV 269


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 439 RPAQVRQRCPAGSEGKMIGIPSAFCR*TYCKN 344
           R A     C  G +GK   +  + C  T CKN
Sbjct: 124 RIADFECNCKNGWKGKTCSLKDSHCDHTTCKN 155


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +1

Query: 385 LSSFLPNLPGIVDGPGQDDNSTLSSVI-AKRPIGGK-----ELLPLTSAQL 519
           +++ LP +  +V  P Q   S L+SVI    PI G+      LLPL   QL
Sbjct: 325 MNNILPCVKELVADPNQHVKSALASVIMGLSPILGRHNTIEHLLPLFLTQL 375


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 449 VLLSSCPGPSTMPGRFGRKDDRDSFSFLPLNLL 351
           V  S C   ST    F +K     F+++P N++
Sbjct: 167 VYSSKCENNSTGVEHFFKKQFHYIFTYMPYNIV 199


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,781
Number of Sequences: 336
Number of extensions: 3350
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)