Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9c03
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   2.4  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   3.2  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    26   4.2  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   4.2  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    26   4.2  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    26   5.6  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   9.7  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    25   9.7  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 100 SSKMMSDQFRKVEPYSPKSSPRGARSPVVSRQDSSGTLK 216
           S   +SDQ  +  P S   SPR   +P+V +Q  S  LK
Sbjct: 441 SGSQVSDQVVE-SPNSSTLSPRNGFAPIVKQQKKSSALK 478


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +1

Query: 259 GPFYLMKEPPGECELTGATNLMAYYGLVHSYSKFNGKKLK-ESLSSFLPNLPGIVDGPGQ 435
           G FYL++ P G C+ +G      Y GL       N K +  +  S+    +P  VD P  
Sbjct: 432 GAFYLLQMPFGGCKKSGYGRFAGYEGL---RGICNSKAIAYDRFSAIHTGIPPAVDYPIP 488

Query: 436 D 438
           D
Sbjct: 489 D 489


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 100 SSKMMSDQFRKVEPYSPKSSPRGARSPVVSRQDSS 204
           SS +  +     EP +P+++   +R P ++ QDSS
Sbjct: 239 SSAITVEHAENAEPETPRNNVSFSRKPSIAEQDSS 273


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 139 PYSPKSSPRGARSPVVSRQDSSGTLKTTISLGKN 240
           P  P SSP  + SP  S ++ S  +K+  SLG N
Sbjct: 334 PSPPLSSPASSASPSESLRNESLGIKSAKSLGLN 367


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 213 QNYYILRQKPVYSAQRTILFDERTPG 290
           QNY + RQK +YS +  IL D++T G
Sbjct: 35  QNYEVERQKLIYSGR--ILADDKTVG 58


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 352 SKFNGKKLKESLSSFLPNLPGIVDGPGQDDNSTLSSVIAKRP 477
           S FNG+K+    SS  P +P I       D    SSV +  P
Sbjct: 177 SAFNGRKVSRRPSSSPPPIPSIPHETTSSDTQKKSSVSSGFP 218


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 151 KSSPRGARSPVVSRQDSSGTLKTTISLGKNPSIVHSGPFYLMKEPPGECEL 303
           +++ R ++ P  S+  S G  K+      +PS VH+ P  L K P G  +L
Sbjct: 153 RNATRKSKKPSASKDTSRGVRKSKAGAPSDPSSVHA-PSSLEK-PAGTGDL 201


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +1

Query: 148 PKSSPRGARSPVVSRQDSSGTLKTTISLGKNPSIVHSGPF 267
           P  S  G   P VS Q+    +   +++   PS+    PF
Sbjct: 240 PSQSLTGESLPTVSNQEKDEGVIEKVAVNNTPSVSSKSPF 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,496
Number of Sequences: 5004
Number of extensions: 58123
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)