Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9c03
(664 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 27 0.16
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 27 0.16
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 27 0.16
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.28
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.28
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.28
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.4
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 23 3.4
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 22 6.0
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 6.0
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 22 6.0
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 27.1 bits (57), Expect = 0.16
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 166 GARSPVVSRQDSSGTLKTTISLGKNPSIVH 255
GA+SP V + + GTL + K P ++H
Sbjct: 640 GAKSPTVLEELTHGTLAASTLYSKRPDLLH 669
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 27.1 bits (57), Expect = 0.16
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 166 GARSPVVSRQDSSGTLKTTISLGKNPSIVH 255
GA+SP V + + GTL + K P ++H
Sbjct: 640 GAKSPTVLEELTHGTLAASTLYSKRPDLLH 669
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 27.1 bits (57), Expect = 0.16
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 166 GARSPVVSRQDSSGTLKTTISLGKNPSIVH 255
GA+SP V + + GTL + K P ++H
Sbjct: 640 GAKSPTVLEELTHGTLAASTLYSKRPDLLH 669
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.28
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +3
Query: 132 SRTIFAKIVAEGCEVTSRLSPRFFWYTQNYYILRQKPVYSAQRTILFDERTPGR 293
S T+F +VAE TS P Y + V ++F RTP R
Sbjct: 235 SLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLIFHHRTPDR 288
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.28
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +3
Query: 132 SRTIFAKIVAEGCEVTSRLSPRFFWYTQNYYILRQKPVYSAQRTILFDERTPGR 293
S T+F +VAE TS P Y + V ++F RTP R
Sbjct: 235 SLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLIFHHRTPDR 288
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.28
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +3
Query: 132 SRTIFAKIVAEGCEVTSRLSPRFFWYTQNYYILRQKPVYSAQRTILFDERTPGR 293
S T+F +VAE TS P Y + V ++F RTP R
Sbjct: 235 SLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLIFHHRTPDR 288
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 1.1
Identities = 16/54 (29%), Positives = 20/54 (37%)
Frame = +3
Query: 132 SRTIFAKIVAEGCEVTSRLSPRFFWYTQNYYILRQKPVYSAQRTILFDERTPGR 293
S T+F +VAE TS P Y + V + F RTP R
Sbjct: 303 SLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLNFHHRTPDR 356
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.4
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = +3
Query: 132 SRTIFAKIVAEGCEVTSRLSPRFFWYTQNYYILRQKPVYSAQRTILFDERTPGR 293
S T+F +VAE S P Y + V ++F RTP R
Sbjct: 235 SLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPDR 288
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.4
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = +3
Query: 132 SRTIFAKIVAEGCEVTSRLSPRFFWYTQNYYILRQKPVYSAQRTILFDERTPGR 293
S T+F +VAE S P Y + V ++F RTP R
Sbjct: 235 SLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPDR 288
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.4
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = +3
Query: 132 SRTIFAKIVAEGCEVTSRLSPRFFWYTQNYYILRQKPVYSAQRTILFDERTPGR 293
S T+F +VAE S P Y + V ++F RTP R
Sbjct: 235 SLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPDR 288
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 22.6 bits (46), Expect = 3.4
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -3
Query: 257 LCTIDGFLPKDIVVLSVPEESWRETTGDLAPLGDDFGEYGST 132
L +++ +L K+ + + SWR + D+F E+G +
Sbjct: 231 LTSLNAYLIKNQTITCPIKVSWRADGQIMVDYEDEFDEFGDS 272
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.8 bits (44), Expect = 6.0
Identities = 14/61 (22%), Positives = 23/61 (37%)
Frame = +1
Query: 157 SPRGARSPVVSRQDSSGTLKTTISLGKNPSIVHSGPFYLMKEPPGECELTGATNLMAYYG 336
SP G SP L +T G+N ++ P + + C + G +YG
Sbjct: 64 SPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHLCSICGDRASGKHYG 123
Query: 337 L 339
+
Sbjct: 124 V 124
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 605 IRNISIKTVRLLGQETP 655
+ S+K++RL G ETP
Sbjct: 745 VSTTSVKSLRLEGDETP 761
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.8 bits (44), Expect = 6.0
Identities = 14/61 (22%), Positives = 23/61 (37%)
Frame = +1
Query: 157 SPRGARSPVVSRQDSSGTLKTTISLGKNPSIVHSGPFYLMKEPPGECELTGATNLMAYYG 336
SP G SP L +T G+N ++ P + + C + G +YG
Sbjct: 64 SPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHLCSICGDRASGKHYG 123
Query: 337 L 339
+
Sbjct: 124 V 124
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,189
Number of Sequences: 438
Number of extensions: 4083
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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