Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9c02
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    25   0.61 
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    22   4.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   7.5  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 358 RRHTCRSGLMSCGYHAP 308
           +R T   G  +CGYH+P
Sbjct: 28  KRSTISQGCKACGYHSP 44


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory
          receptor candidate 60 protein.
          Length = 364

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 83 LVICNCSLKKIKNFFTSCLAP 21
          LVI N  L  + +++T CL P
Sbjct: 6  LVIVNLGLNGLIDWYTVCLVP 26


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 513 ISNVHEAQCSDIWRVSVLQQPVN 445
           I N H   CSD +  S  Q  +N
Sbjct: 164 IGNSHRCHCSDGYSGSYCQTEIN 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,136
Number of Sequences: 336
Number of extensions: 3281
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)