Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9c02
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)                      141   6e-34
SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)                     30   2.1  
SB_35522| Best HMM Match : AT_hook (HMM E-Value=7.3)                   28   6.5  

>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
          Length = 381

 Score =  141 bits (341), Expect = 6e-34
 Identities = 70/135 (51%), Positives = 80/135 (59%)
 Frame = +1

Query: 238 LFKLKTYHEVVDEIYYQVKHLEPWERGSRKTSXXXXXXXXXXXXXXXXXXSTAFCXXXXX 417
           L++LKTYHEVVDEIYY+V HLEPWE+GSRKTS                  STA+C     
Sbjct: 47  LYQLKTYHEVVDEIYYKVDHLEPWEKGSRKTSGQVGMCGGVRGVGAGGIVSTAYCLLYKL 106

Query: 418 XXXXXXXXQVNGLLQHTDSPYIRALGFMYIRYTQPPADLXXXXXXXXXXXXXXXPRAGGG 597
                   Q+NGLL HTDSPYIRALGFMYIRY QPPADL               P+AG G
Sbjct: 107 FTLRLTRKQLNGLLTHTDSPYIRALGFMYIRYCQPPADLWEWYEPYLEDEEEVDPKAGTG 166

Query: 598 ASTTIGALVRQMLVK 642
            + T+G LVR  L+K
Sbjct: 167 CTMTMGQLVRSFLLK 181



 Score = 37.1 bits (82), Expect = 0.014
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +2

Query: 641 KLDWFSTLFPRIPVPIXK 694
           KL+W+ TLFPRIPVPI K
Sbjct: 181 KLEWYGTLFPRIPVPIQK 198


>SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 834

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 518 CVYRMYMKPSALIYGESVCCNNPLTCF 438
           C+Y  Y+  SAL++G ++C  +P   F
Sbjct: 156 CLYVTYLTSSALMHGRALCARDPFEVF 182


>SB_35522| Best HMM Match : AT_hook (HMM E-Value=7.3)
          Length = 250

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 563 MKKRLTPVLEV-VHPQLLEHLYD 628
           MK  LTP L+  +HP+ L+HLY+
Sbjct: 64  MKSTLTPALKAPLHPRPLQHLYE 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,751,323
Number of Sequences: 59808
Number of extensions: 385027
Number of successful extensions: 1706
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)