Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9b21
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    27   0.15 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.46 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   5.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.5  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.9  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   9.9  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 308 PASRPGSCAHPTSARTPSHCRAPQTRKQKRD 216
           PA+ P S A PT   TPS   +P T   K++
Sbjct: 211 PAAAPRSVATPTGIPTPSTSASPPTVNIKKE 241


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
            protein.
          Length = 947

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -3

Query: 106  PHPAGQTARRI-FVCGGHVERARACRCGRSE 17
            P   G TAR +  VC G     RA  CGR E
Sbjct: 908  PASGGTTARVVRCVCAGSTGTRRATGCGRVE 938



 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 33  RHARARSTCPPQ 68
           RH  A STC PQ
Sbjct: 641 RHVMAPSTCQPQ 652


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/28 (28%), Positives = 11/28 (39%)
 Frame = -1

Query: 165 PSHTRNAVASSSETSARHHRRTQPDKPR 82
           P    N        +  H RR +P +PR
Sbjct: 306 PGEKTNIAPRERPRATDHQRRNEPKRPR 333


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 127 DQRSPPSPHPAGQTAR 80
           D + PP PHP  Q  R
Sbjct: 732 DVKLPPPPHPHHQPPR 747



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 181 HHGADAEPHEERRGQQLGDQRSPPSPHPAGQ 89
           H G      + +    +G  R P  P PAGQ
Sbjct: 141 HMGIPPYQLDSKTAGSMGLTRPPMYPFPAGQ 171


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 127 DQRSPPSPHPAGQTAR 80
           D + PP PHP  Q  R
Sbjct: 624 DVKLPPPPHPHHQPPR 639



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 181 HHGADAEPHEERRGQQLGDQRSPPSPHPAGQ 89
           H G      + +    +G  R P  P PAGQ
Sbjct: 33  HMGIPPYQLDSKTAGSMGLTRPPMYPFPAGQ 63


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 637 SSRRVSPGENQPGHHESQLHGHH 569
           +S  +S G     ++  QLH HH
Sbjct: 71  NSNVLSNGYGYGNYYHPQLHSHH 93


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 637 SSRRVSPGENQPGHHESQLHGHH 569
           +S  +S G     ++  QLH HH
Sbjct: 71  NSNVLSNGYGYGNYYHPQLHSHH 93


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 637 SSRRVSPGENQPGHHESQLHGHH 569
           +S  +S G     ++  QLH HH
Sbjct: 71  NSNVLSNGYGYGNYYHPQLHSHH 93


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 637 SSRRVSPGENQPGHHESQLHGHH 569
           +S  +S G     ++  QLH HH
Sbjct: 71  NSNVLSNGYGYGNYYHPQLHSHH 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,085
Number of Sequences: 336
Number of extensions: 2209
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)