Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9b19
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    29   0.76 
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    28   1.3  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    27   2.3  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.3  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   9.3  
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    25   9.3  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    25   9.3  

>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 661 KAVAITDLKVKLYNNLAHCQLQYNEYEAALDLCNRAIKYDPE 786
           KA+ +      LY+N +   L+  +Y  A++  ++AI+ DPE
Sbjct: 30  KAIELDSTNAILYSNRSLAHLKSEDYGLAINDASKAIECDPE 71


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 679 DLKVKLYNNLAHCQLQYNEYEAALDLCNRAIKYD 780
           D+++  Y+N A C L +  Y   L+ C + ++ D
Sbjct: 99  DIEIACYSNRAACNLLFENYRQVLNDCAQVLQRD 132


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -1

Query: 567 LFH*FYTFLLVVYRSFHQSLPAPVTNELLFSHFLQLYVTRDLLHQLSTTIPI 412
           +FH    F++      H  LPA +   LL   F+QL   +     +S  +PI
Sbjct: 656 VFHYLPFFIMGRQLFLHHYLPAHLAGSLLVGAFIQLACRKSFRSPVSAGVPI 707


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 724 QYNEYEAALDLCNRAIKYDP 783
           Q N+Y+ ALD  +RAI+ +P
Sbjct: 630 QINQYQDALDAYSRAIRLNP 649


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 667 VAITDLKVKLYNNLAHCQLQYNEYEAALDLCN 762
           +A   LK  LY N+   QL +  Y++ +DL N
Sbjct: 479 LAAETLKKSLYKNVDQPQLLFQFYQSIMDLNN 510


>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 685 KVKLYNNLAHCQLQYNEYEAALDLCNRAIKYDP 783
           K+KL  N A   +   +Y+ ALDL  +AI+ DP
Sbjct: 85  KLKLEGNNA---IAAKDYQKALDLYTKAIEIDP 114


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 706 LAHCQLQYNEYEAALDLCNRAIKYDP 783
           LA+C     E+  AL   NRAI+ DP
Sbjct: 437 LANCFSLQREHSQALKCINRAIQLDP 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,190
Number of Sequences: 5004
Number of extensions: 56812
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)