Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9b19
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0424 + 3041296-3041860,3042701-3042786,3042858-3043147,304... 42 7e-04
08_02_1322 + 26131395-26131599,26132382-26132468,26133119-261333... 36 0.028
01_05_0361 + 21377080-21377281,21378619-21378705,21379862-213801... 36 0.028
06_01_0422 + 3034556-3034777,3034859-3035138,3036398-3036483,303... 36 0.037
03_03_0065 + 14192725-14192813,14193004-14193088,14193971-141940... 35 0.084
08_02_0822 + 21549257-21550729,21550776-21550877 33 0.19
04_03_0532 - 16824394-16824447,16824545-16824665,16824748-168248... 33 0.26
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317... 32 0.59
12_02_0346 - 17776871-17781445 31 1.0
12_02_0343 - 17748882-17753396 31 1.0
11_08_0033 + 27820563-27823482,27823593-27823996 29 4.2
>06_01_0424 +
3041296-3041860,3042701-3042786,3042858-3043147,
3043225-3043285,3043773-3043868,3044448-3044603,
3044811-3044987
Length = 476
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Frame = +1
Query: 508 ERL-MEASIHHKEKGVELVKEKRILDAFRRFSKALKMVVXXXXXXXXXXXXXKAVAI--T 678
ERL EA+ H+++G+EL+++K+ +A +FS+A+K + + T
Sbjct: 175 ERLDQEAAKTHRDRGLELLRKKKYKEAEMQFSEAIKRNPRYPKICLQLLLFNFGIHLFMT 234
Query: 679 DLKVKLYNNLAHCQLQYNEYEAALDLCNRAIKYD 780
D+ + +++ A C ++ N AL+ NR I+ D
Sbjct: 235 DMITQNFSDRARCLVELNSLPKALEDANRCIELD 268
>08_02_1322 +
26131395-26131599,26132382-26132468,26133119-26133372,
26133430-26133526,26133613-26133693,26133782-26133976,
26134093-26134182,26134296-26134471,26134565-26134687,
26134799-26134945,26135027-26135163,26135247-26135364,
26135462-26135518
Length = 588
Score = 36.3 bits (80), Expect = 0.028
Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 13/226 (5%)
Frame = +1
Query: 148 DRVIRKKLKNPGDYTIVPYEDSRCKIKITNLAC--TNHLGKCEIEPESKIFSTNFDGNVL 321
D+ I KK+ G P E + K+KIT T K EPE F T
Sbjct: 282 DKKILKKVLTEGTGYERPNEGAVVKVKITGKLQDGTIFTKKGHDEPEPFEFKT------- 334
Query: 322 IGDSDFFIDKDFELILQQMCSGETCEVNMV--YRDGSGELVKEISC---------DIELK 468
D + ID +L M +GE V + Y GS E ++++ ++EL
Sbjct: 335 --DEEEVIDGIDRAVLN-MKNGEVALVTIPPEYAFGSTESKQDLAVVPPNSTVIYEVELV 391
Query: 469 EVTEEQLISDWSWERLMEASIHHKEKGVELVKEKRILDAFRRFSKALKMVVXXXXXXXXX 648
+++ D + +E + KE+G L K + + A +R+ KA K +
Sbjct: 392 SFVKDKESWDLNNTEKIETAGAKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDE 451
Query: 649 XXXXKAVAITDLKVKLYNNLAHCQLQYNEYEAALDLCNRAIKYDPE 786
K LKV N A C+L+ +Y+ A LC + ++ D +
Sbjct: 452 KKQSK-----QLKVTCNLNNAACKLKLKDYKQAEKLCTKVLELDSQ 492
>01_05_0361 +
21377080-21377281,21378619-21378705,21379862-21380134,
21380304-21380378,21380470-21380550,21380837-21381034,
21381145-21381234,21381310-21381467,21381619-21381741,
21381891-21382034,21382175-21382285,21382583-21382624,
21383043-21383261,21385319-21385627
Length = 703
Score = 36.3 bits (80), Expect = 0.028
Identities = 26/113 (23%), Positives = 48/113 (42%)
Frame = +1
Query: 445 ISCDIELKEVTEEQLISDWSWERLMEASIHHKEKGVELVKEKRILDAFRRFSKALKMVVX 624
++ +IEL V ++ S +EA+ +++G +L + L A+RR+ KA ++++
Sbjct: 377 VTYEIELVSVVNDKPPRLMSQAETIEAAAEKEKEGDKLFSSSKFLRAYRRYYKARQIILL 436
Query: 625 XXXXXXXXXXXXKAVAITDLKVKLYNNLAHCQLQYNEYEAALDLCNRAIKYDP 783
I + + L A C Q YE A ++YDP
Sbjct: 437 RFGRGETDEE------IKQMLISLTFKAAECANQLQRYEQAYHRYREILEYDP 483
>06_01_0422 +
3034556-3034777,3034859-3035138,3036398-3036483,
3036614-3036837,3036911-3036971,3037634-3037828,
3037981-3038205
Length = 430
Score = 35.9 bits (79), Expect = 0.037
Identities = 15/31 (48%), Positives = 24/31 (77%)
Frame = +1
Query: 520 EASIHHKEKGVELVKEKRILDAFRRFSKALK 612
EA+ HH+EKG EL+ +K+ +A +F+KA+K
Sbjct: 159 EAAKHHREKGKELLSKKKYKEAAIQFTKAIK 189
>03_03_0065 +
14192725-14192813,14193004-14193088,14193971-14194040,
14194730-14194827,14194931-14195101,14196192-14196224,
14196762-14196820,14197143-14197190,14197399-14197480,
14198317-14198475,14199036-14199093,14199801-14199949,
14200403-14200503,14200574-14200643,14201088-14201147,
14201883-14201939,14202247-14202315,14202485-14202562,
14202996-14203097,14203203-14203274,14203361-14203648
Length = 665
Score = 34.7 bits (76), Expect = 0.084
Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 13/183 (7%)
Frame = +1
Query: 274 EPESKIFSTNFDGN---VLIGDSDFFIDKDFELILQQMCSGE----TCEVNMVYRDGSGE 432
EP+S + T D + + + + + FE+ ++ M GE TC + Y D
Sbjct: 342 EPKSIFYDTRVDNHGEPLEFCSGEGLVPEGFEMCVRLMLPGEKSIVTCPPDFAY-DKFPR 400
Query: 433 LVKEISCDIELK---EVTEEQLISDWS---WERLMEASIHHKEKGVELVKEKRILDAFRR 594
L + ++ E+ ++ DW+ ++ +M+ + K G L KE + A +
Sbjct: 401 LPANVPEGAHVQWEIELLGFEMPKDWTGFTFQEIMDDAEKIKTTGNRLFKEGKFELAKAK 460
Query: 595 FSKALKMVVXXXXXXXXXXXXXKAVAITDLKVKLYNNLAHCQLQYNEYEAALDLCNRAIK 774
+ K L+ + + + L+ N+A C + EY ++D CN+ ++
Sbjct: 461 YEKVLR-----EYNHVHPQDDDEGKIFANSRSSLHLNVAACYQKMGEYRKSIDTCNKVLE 515
Query: 775 YDP 783
+P
Sbjct: 516 ANP 518
>08_02_0822 + 21549257-21550729,21550776-21550877
Length = 524
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 460 ELKEVTEEQLISDWSWERLMEASIHHKEKGVELVKE 567
+L++ EEQ + W ++R+ E I H +K +E+++E
Sbjct: 47 KLQKEKEEQRMEAWQYKRIAEEKISHSDKALEILQE 82
>04_03_0532 -
16824394-16824447,16824545-16824665,16824748-16824875,
16825457-16825603,16825682-16825807,16825895-16826160,
16826259-16826453,16826577-16826657,16826756-16826830,
16827270-16827530,16827633-16827719,16827844-16828060
Length = 585
Score = 33.1 bits (72), Expect = 0.26
Identities = 24/88 (27%), Positives = 38/88 (43%)
Frame = +1
Query: 517 MEASIHHKEKGVELVKEKRILDAFRRFSKALKMVVXXXXXXXXXXXXXKAVAITDLKVKL 696
+EA+ K++G K + A +R+ KA K + KA LKV
Sbjct: 408 IEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDEKKQSKA-----LKVSC 462
Query: 697 YNNLAHCQLQYNEYEAALDLCNRAIKYD 780
N A C+L+ EY A LC + ++ +
Sbjct: 463 KLNNAACKLKLKEYREAEKLCTKVLELE 490
>06_01_0449 -
3176135-3176329,3176531-3177289,3177420-3177905,
3178302-3178421,3178637-3178703,3178784-3179007,
3179149-3179234,3179936-3180509
Length = 836
Score = 31.9 bits (69), Expect = 0.59
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +1
Query: 508 ERL-MEASIHHKEKGVELVKEKRILDAFRRFSKALK 612
ERL EA+ HH+++G + K+KR +A +++A+K
Sbjct: 178 ERLDQEAADHHRDRGNDFFKQKRYQEAAMHYTEAMK 213
>12_02_0346 - 17776871-17781445
Length = 1524
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -1
Query: 459 YVTRDLLHQLSTTIPIHHVHFTSFSAAHLLQD*LKVFVNKKI*IAN*YVTVEIGAEN 289
YV DLLH+L+T I H + + S + + K + I + N +V I EN
Sbjct: 570 YVMHDLLHELATNISSHEIRCLNSSTLSSINEIPKSIRHMSIIVDNRHVENRIAFEN 626
>12_02_0343 - 17748882-17753396
Length = 1504
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -1
Query: 459 YVTRDLLHQLSTTIPIHHVHFTSFSAAHLLQD*LKVFVNKKI*IAN*YVTVEIGAEN 289
YV DLLH+L+T I H + + S + + K + I + N +V I EN
Sbjct: 571 YVMHDLLHELATNISSHEIRCLNSSTLSSINEIPKSIRHMSIIVDNRHVENRIAFEN 627
>11_08_0033 + 27820563-27823482,27823593-27823996
Length = 1107
Score = 29.1 bits (62), Expect = 4.2
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -1
Query: 573 SLLFH*FYTFLLVVYRSFHQSLPAPVTNELLFSHFLQLYVTRDLLHQ-LSTTIPIHHVHF 397
S +H T+L + + SF S+P FSH L T DL + LS TIP + +F
Sbjct: 636 SYAYHPMLTYLNLSHNSFRDSIPDS------FSHLTNL-ATLDLSYNNLSGTIPKYLANF 688
Query: 396 TSFSAAHL 373
T + +L
Sbjct: 689 TYLTTLNL 696
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,635,895
Number of Sequences: 37544
Number of extensions: 337289
Number of successful extensions: 842
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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