Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9b19
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-1|AAK27872.1|  402|Caenorhabditis elegans Hypothetical ...    29   3.8  
U97405-9|AAB53012.2|  266|Caenorhabditis elegans C-term of hsp70...    29   5.0  
AF303269-1|AAG50227.1|  266|Caenorhabditis elegans Hsp70-interac...    29   5.0  
AF016422-4|AAG24172.1|  320|Caenorhabditis elegans Hypothetical ...    29   5.0  

>AC087079-1|AAK27872.1|  402|Caenorhabditis elegans Hypothetical
           protein Y37E3.1 protein.
          Length = 402

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 691 KLYNNLAHCQLQYNEYEAALDLCNRAIKYDP 783
           ++Y N+A C     +Y+ AL +  +A++YDP
Sbjct: 217 QVYINMATCLKFMEKYDEALAVLQKAVEYDP 247


>U97405-9|AAB53012.2|  266|Caenorhabditis elegans C-term of
           hsp70-interacting protein(chip family) protein 1
           protein.
          Length = 266

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 661 KAVAITDLKVKLYNNLAHCQLQYNEYEAALDLCNRAIKYDP 783
           KA+ +  L  K Y N A C  Q N  +   + C RA++  P
Sbjct: 30  KAIKVNPLP-KYYQNRAMCYFQLNNLKMTEEDCKRALELSP 69


>AF303269-1|AAG50227.1|  266|Caenorhabditis elegans
           Hsp70-interacting protein protein.
          Length = 266

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 661 KAVAITDLKVKLYNNLAHCQLQYNEYEAALDLCNRAIKYDP 783
           KA+ +  L  K Y N A C  Q N  +   + C RA++  P
Sbjct: 30  KAIKVNPLP-KYYQNRAMCYFQLNNLKMTEEDCKRALELSP 69


>AF016422-4|AAG24172.1|  320|Caenorhabditis elegans Hypothetical
           protein R09E12.3 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 694 LYNNLAHCQLQYNEYEAALDLCNRAIKYD 780
           LY+N A C  +  E++ ALD C+  I+ D
Sbjct: 176 LYSNRAACLTKLMEFQRALDDCDTCIRLD 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,889,846
Number of Sequences: 27780
Number of extensions: 317717
Number of successful extensions: 887
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)