Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9b08
         (671 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   3.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   3.0  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    21   9.2  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    21   9.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.2  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 336 PLKHDYKYTGVL-TVPDPAVPARMKVRFPLSVAGSA 440
           P+   YK+  V   VP P VP      FP + + SA
Sbjct: 192 PVLPTYKWMQVKRNVPKPTVPKIPPAEFPTTSSSSA 227


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 336 PLKHDYKYTGVL-TVPDPAVPARMKVRFPLSVAGSA 440
           P+   YK+  V   VP P VP      FP + + SA
Sbjct: 192 PVLPTYKWMQVKRNVPKPTVPKIPPAEFPTTSSSSA 227


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 626 DRQIIRVHSIRRKL*TH 576
           DRQ ++V ++RR L  H
Sbjct: 44  DRQFVQVANLRRHLRVH 60


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 514 IDDLPLSSRERKNSTKCLLIK 576
           IDD+  + R  KN   CLL K
Sbjct: 28  IDDILSNERLLKNYVNCLLDK 48


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 626 DRQIIRVHSIRRKL*TH 576
           DRQ ++V ++RR L  H
Sbjct: 197 DRQFVQVANLRRHLRVH 213


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,118
Number of Sequences: 336
Number of extensions: 3349
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)