Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9b08
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    30   0.26 
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    25   9.9  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   9.9  

>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = -3

Query: 513 ERTLASDK*RPRRMLYSPLPKLCSLLNRQRSEGIEPSSLQEQRGQALSGLQYICSRVSRA 334
           E + A+ K  P     SP P + +  +R+RS  + PS +   +      L+   + V   
Sbjct: 255 EHSPATSKHEPEETPASPTPSVSASTSRERSTSVAPSFITSDQAATPDVLKSEEAHVESF 314

Query: 333 SIRV*NVESPVPADI 289
           S      ++P+P D+
Sbjct: 315 SKESEKDQTPIPEDV 329


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 391 FLQG*RFDSL*ALPVQQATQFWQRTIQH 474
           FLQ     SL   P++  +QFW++ +Q+
Sbjct: 78  FLQNHGVKSLDVPPIETPSQFWRKPLQY 105


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 290 ISAGTGLSTFHTRIDALETRLQIYWSPDSA*PRCSCKDEGSI-PSER 427
           +S+GT        I     R   Y  P S  P+C  +D+G   P++R
Sbjct: 654 VSSGTSTPRMAAPIARRSNRHHPYSRPSSTRPQCQLEDQGICDPNDR 700


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,403
Number of Sequences: 5004
Number of extensions: 56095
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)