Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9b08
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53799| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  29   3.4  
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)          28   6.0  

>SB_53799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +2

Query: 314 TFHTRIDALETRLQIYWSP---DSA*PRCSCKDEGSIPSERCRFSKLHSFGNGLYNIRRG 484
           T H R+ AL+TR+ I       D    R     +GS+P E+C  S  H      Y+I+R 
Sbjct: 40  TVHKRVRALQTRMPIGRRECYFDGQTYRYGDSRKGSMPCEKCG-SSYHIISGSSYHIKRQ 98

Query: 485 LHLSEASV 508
               +A+V
Sbjct: 99  YLSHKAAV 106


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -1

Query: 482  RGVCCIVRCQNCVAC*TGNAQRESNLHP 399
            R VC  V C N  AC T  A + S  HP
Sbjct: 1315 RDVCYSVTCFNSTACHTVKAHKASEFHP 1342


>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
          Length = 1217

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 459 TDYTTYAAVFTCQKLAFAHRRSATILSRTKELDKMFVD 572
           T  TT+  ++ C +L F    SA I  R  ++D++F D
Sbjct: 341 TTLTTHKGLYACNRLPFGVASSAAIFQR--QMDRIFKD 376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,774,186
Number of Sequences: 59808
Number of extensions: 435322
Number of successful extensions: 1158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)