Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9b05
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    32   0.074
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    27   3.7  
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    26   6.4  
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   6.4  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    26   6.4  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.5  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   8.5  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 32.3 bits (70), Expect = 0.074
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +1

Query: 529 EDCLTINVYIPALARKL--LPVMVYVHGGAFVLGS 627
           EDCL +N+++PA  +     PV+ ++HGG   +G+
Sbjct: 80  EDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGN 114


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 331 IEQGILSGKISPDGSFFEYV 390
           IE G  +G I+PD + FEYV
Sbjct: 236 IEAGARAGMIAPDATTFEYV 255


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 507 DYWDYWFRRLFNYKRVHTRFSEK 575
           D W YW  RLF+Y  +  RF  K
Sbjct: 147 DTWHYWAHRLFHY-GIFYRFIHK 168


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 406 TSNINTRFK-APLPPPSWNGVFKAVEETSMCPQASIIGIIGSEDCLTI 546
           TSN  + F  +PL P ++  V+  +   S CP+AS    + S    TI
Sbjct: 45  TSNDASTFSNSPLVPDNFGVVYPGIIYRSACPRASNFNFLESLHIRTI 92


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 437 GALNLVLMLLVAYGIPTYSKNDPSGL 360
           G L  ++  +  YG  TY KND S +
Sbjct: 10  GVLLAIVFYIFTYGFSTYRKNDTSAV 35


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 426 VQGAIAATIMEWSFQSSRRNIYVSASI 506
           +Q AIA T   + F +SRRN  +S SI
Sbjct: 137 LQSAIAQTGNNYMFTTSRRNNSISGSI 163


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 728 PKHIKPKAPSL*LNVTKITSCLTRKSGAYNSLPPLPST 615
           P H++P   S  LN + +       S  +N+ PPLPST
Sbjct: 342 PLHLEPPLSSNTLNSSTLPQ---PNSTDFNTFPPLPST 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,707
Number of Sequences: 5004
Number of extensions: 62407
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)