Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9b04
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    27   3.5  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.7  

>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 291 FIHVMGLRPTELLFLLLHFDRVS*LYFSCFVFQL 190
           ++H +G R  EL F L     VS +Y+SC  F L
Sbjct: 12  YLHDIGNRTDELDFWLKEHLHVSAIYWSCMSFWL 45


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 206 QEK*SQETRSK-CRSRNKSSVGRNPITCMKKLPGESGRDFSLRINSALKALHNPVENLDY 382
           Q+K   E++ K  +  N  +  +     +++LPGE   +FS R+N A+     PV     
Sbjct: 43  QQKEYHESKKKEIKKGNLKNKKKKDYGKIQRLPGERLSEFSQRVNKAI-----PVSFKSG 97

Query: 383 PEDIDTEDTKGE 418
           P  ID    K E
Sbjct: 98  PSKIDEFTDKKE 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,624
Number of Sequences: 5004
Number of extensions: 40029
Number of successful extensions: 112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)