Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9b04
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0106 - 18034965-18034975,18035128-18035323,18036320-180364...    30   1.6  
07_01_0615 + 4551557-4551835                                           29   4.8  
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256...    29   4.8  
06_03_0828 + 25137782-25138312,25141349-25141588                       29   4.8  
01_06_1147 + 34892415-34893702,34894051-34894676                       28   6.4  
05_06_0226 + 26561673-26562908                                         28   8.5  

>05_04_0106 -
           18034965-18034975,18035128-18035323,18036320-18036412,
           18037219-18037264,18037411-18037538,18037892-18037959,
           18038058-18038084,18038181-18038291,18038404-18038482
          Length = 252

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 65  NGS*NTCQKTSRSERSLSATGPAGTKVII 151
           +GS   CQ T + E  L+ +GP G K+++
Sbjct: 34  HGSSLRCQSTEQEEEELTISGPRGAKIVV 62


>07_01_0615 + 4551557-4551835
          Length = 92

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +3

Query: 558 RRARSARWCTSTCRSASSPTRRPRCAATGGSAPHPMRAGA-RCC 686
           R  R+ RW  +      +     R AAT  +A  P  AGA  CC
Sbjct: 21  RHGRAGRWWLTRSSGRDAHDESSRVAATAEAADRPSAAGACSCC 64


>07_01_0353 +
           2563807-2564496,2564595-2564660,2564853-2564918,
           2565044-2565115,2565196-2565261,2565355-2565417,
           2565505-2565570,2565963-2566062,2567403-2567504,
           2567772-2567995,2568200-2568314,2568653-2568763,
           2568873-2569088,2569426-2569624,2570690-2570790,
           2570872-2570919,2571052-2571236,2571345-2571462,
           2571572-2571699,2571981-2572107,2572529-2572647,
           2572770-2572938,2573078-2573162,2573247-2573320,
           2573449-2573568,2574068-2574251,2574343-2574464,
           2574548-2574755,2574885-2574958,2575047-2575185,
           2575275-2575456,2575852-2576007,2576153-2576284,
           2576508-2576566,2576913-2576945,2577065-2577196,
           2577303-2577479
          Length = 1675

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +2

Query: 191 SWKTKQEK*S--QETRSKCRSRNKSSVGRNPITCMKKLPGESGRDFSLRINSALKALHNP 364
           S K+  EK S  Q  R+K  +  K +V  +PI+ +KK+P  +    S   +S  +A  N 
Sbjct: 110 SSKSSLEKKSSVQSERAKVDAMKKPAVKSSPISTLKKVPSLTENSSSSASSSFRRAASNA 169

Query: 365 VENLDYPEDIDTEDTK 412
             N      + +  TK
Sbjct: 170 TLNSPRSPSVTSSVTK 185


>06_03_0828 + 25137782-25138312,25141349-25141588
          Length = 256

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 648 SLPWRRSAGGAWASSPNG 595
           S PWRR+ GG WA    G
Sbjct: 126 STPWRRTTGGRWARGGGG 143


>01_06_1147 + 34892415-34893702,34894051-34894676
          Length = 637

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +2

Query: 473 GQEDSEPQLNRNQRLAQKKKEXKMKALDAASEKCEVVYEHVPFGELA 613
           G++D E Q+    R+ Q +    ++A   + ++  +VY+++P G LA
Sbjct: 379 GKKDFEQQMEIVGRVGQHQNVVPLRAYYYSKDEKLLVYDYIPSGSLA 425


>05_06_0226 + 26561673-26562908
          Length = 411

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 663 LGAGPSLPWRRSAGGAWASSPN 598
           +G  P LP+R S  G W+ SP+
Sbjct: 362 IGDAPKLPYRCSDNGKWSKSPS 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,242,572
Number of Sequences: 37544
Number of extensions: 274133
Number of successful extensions: 1074
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)