Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9b04
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68882-13|CAA93102.1|  296|Caenorhabditis elegans Hypothetical p...    30   1.9  
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    28   7.6  
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ...    28   7.6  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    28   7.6  

>Z68882-13|CAA93102.1|  296|Caenorhabditis elegans Hypothetical
           protein C47E12.10 protein.
          Length = 296

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +2

Query: 479 EDSEPQLNRNQRLAQKKKEXKMKALDAASEKCE 577
           EDSE Q  R +R A KK++ K+KA   A++K E
Sbjct: 57  EDSENQRRRKKRAADKKRK-KIKAAKVAAQKKE 88


>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
            protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +1

Query: 148  YKMYILT*NY*KTVKLENETRKIKSRDSIKMQE*KQ----KFSWTQPHNMYEEVTRRE 309
            Y  Y +  NY K  K  N  R +++      +E ++    KF W Q   +Y+ V + E
Sbjct: 1061 YNNYKMEKNYEKVYKKHNGRRYLEAEPEYDEEEHREQITKKFEWLQNEKVYQHVAKFE 1118


>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 6, isoform
            a protein.
          Length = 1650

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +1

Query: 148  YKMYILT*NY*KTVKLENETRKIKSRDSIKMQE*KQ----KFSWTQPHNMYEEVTRRE 309
            Y  Y +  NY K  K  N  R +++      +E ++    KF W Q   +Y+ V + E
Sbjct: 1061 YNNYKMEKNYEKVYKKHNGRRYLEAEPEYDEEEHREQITKKFEWLQNEKVYQHVAKFE 1118


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 6, isoform
            c protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +1

Query: 148  YKMYILT*NY*KTVKLENETRKIKSRDSIKMQE*KQ----KFSWTQPHNMYEEVTRRE 309
            Y  Y +  NY K  K  N  R +++      +E ++    KF W Q   +Y+ V + E
Sbjct: 1061 YNNYKMEKNYEKVYKKHNGRRYLEAEPEYDEEEHREQITKKFEWLQNEKVYQHVAKFE 1118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,841,846
Number of Sequences: 27780
Number of extensions: 235030
Number of successful extensions: 814
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)