Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9a20
(427 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 1.4
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 23 1.4
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 1.4
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 23 1.9
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 23 1.9
AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein. 23 1.9
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 22 3.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 4.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 4.4
DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase ... 21 5.8
DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase ... 21 5.8
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 21 7.6
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 21 7.6
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.0 bits (47), Expect = 1.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 109 HEEIRIPQCFI**AAQGWCISLHRIDIVWD 198
+ I P CF+ W I LH D+V D
Sbjct: 407 YSRIVFPVCFVCFNLMYWIIYLHISDVVAD 436
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.0 bits (47), Expect = 1.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 109 HEEIRIPQCFI**AAQGWCISLHRIDIVWD 198
+ I P CF+ W I LH D+V D
Sbjct: 407 YSRIVFPVCFVCFNLMYWIIYLHISDVVAD 436
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.0 bits (47), Expect = 1.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 201 FYSLITFTSTSSMCGHRYKHPKQLLNKSFCQKVLQRK 311
FYS + S+ S C K + LL S Q+ +R+
Sbjct: 958 FYSSFLYKSSESSCNPDQKPTEYLLEDSMKQQYGKRR 994
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 22.6 bits (46), Expect = 1.9
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -2
Query: 192 YNVNPMQTNTPPLCSLSYKALRDPYFFMVLKRI 94
Y N P + +LRDP FF + K I
Sbjct: 392 YESNVKYQVVPSALQMWSTSLRDPVFFSIYKTI 424
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 22.6 bits (46), Expect = 1.9
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -2
Query: 192 YNVNPMQTNTPPLCSLSYKALRDPYFFMVLKRI 94
Y N P + +LRDP FF + K I
Sbjct: 392 YESNVKYQVVPSALQMWSTSLRDPVFFSIYKTI 424
>AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein.
Length = 226
Score = 22.6 bits (46), Expect = 1.9
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -2
Query: 192 YNVNPMQTNTPPLCSLSYKALRDPYFFMVLKRI 94
Y N P + +LRDP FF + K I
Sbjct: 18 YESNVKYQVVPSALQMWSTSLRDPVFFSIYKTI 50
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 21.8 bits (44), Expect = 3.3
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 174 QTNTPPLCSLSYK-ALRDPYFFMVLKRI 94
+ N P SY ++RDP F+M+ ++I
Sbjct: 400 KNNLIPSALQSYSTSMRDPAFYMLYQKI 427
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 4.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 137 KHCGIRISSWY*KG*KCELFLS 72
+HC ++ SW G + +L LS
Sbjct: 123 QHCDMKFGSWTYDGNQVDLVLS 144
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 4.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 137 KHCGIRISSWY*KG*KCELFLS 72
+HC ++ SW G + +L LS
Sbjct: 123 QHCDMKFGSWTYDGNQVDLVLS 144
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 4.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 137 KHCGIRISSWY*KG*KCELFLS 72
+HC ++ SW G + +L LS
Sbjct: 123 QHCDMKFGSWTYDGNQVDLVLS 144
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 4.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 137 KHCGIRISSWY*KG*KCELFLS 72
+HC ++ SW G + +L LS
Sbjct: 123 QHCDMKFGSWTYDGNQVDLVLS 144
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 4.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 137 KHCGIRISSWY*KG*KCELFLS 72
+HC ++ SW G + +L LS
Sbjct: 123 QHCDMKFGSWTYDGNQVDLVLS 144
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 4.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 137 KHCGIRISSWY*KG*KCELFLS 72
+HC ++ SW G + +L LS
Sbjct: 123 QHCDMKFGSWTYDGNQVDLVLS 144
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 4.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 137 KHCGIRISSWY*KG*KCELFLS 72
+HC ++ SW G + +L LS
Sbjct: 191 QHCDMKFGSWTYDGNQVDLVLS 212
Score = 20.6 bits (41), Expect = 7.6
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +3
Query: 195 GLFYSLITFTSTSSMCGHRYKHPKQLLNKSFCQKVLQRKL 314
G+ + L +F T + Y H ++ +S C + +R L
Sbjct: 20 GVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCGRHEKRLL 59
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 4.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 137 KHCGIRISSWY*KG*KCELFLS 72
+HC ++ SW G + +L LS
Sbjct: 191 QHCDMKFGSWTYDGNQVDLVLS 212
Score = 20.6 bits (41), Expect = 7.6
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +3
Query: 195 GLFYSLITFTSTSSMCGHRYKHPKQLLNKSFCQKVLQRKL 314
G+ + L +F T + Y H ++ +S C + +R L
Sbjct: 20 GVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCGRHEKRLL 59
>DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase
isoform B protein.
Length = 931
Score = 21.0 bits (42), Expect = 5.8
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -1
Query: 391 YIKDKTIFTFSLLKQTLKYYINPPLHN 311
Y +D + LKQ L N LHN
Sbjct: 446 YERDTCLLASDALKQILSAAYNVELHN 472
>DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase
isoform A protein.
Length = 969
Score = 21.0 bits (42), Expect = 5.8
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -1
Query: 391 YIKDKTIFTFSLLKQTLKYYINPPLHN 311
Y +D + LKQ L N LHN
Sbjct: 484 YERDTCLLASDALKQILSAAYNVELHN 510
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 20.6 bits (41), Expect = 7.6
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = -2
Query: 162 PPLCSLSYKALRDPYFFMVLKRI 94
P + +++DP F+ + KRI
Sbjct: 403 PSALEIFSTSMKDPAFYRIYKRI 425
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 20.6 bits (41), Expect = 7.6
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = -2
Query: 162 PPLCSLSYKALRDPYFFMVLKRI 94
P + +++DP F+ + KRI
Sbjct: 403 PSALEIFSTSMKDPAFYRIYKRI 425
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,347
Number of Sequences: 438
Number of extensions: 2330
Number of successful extensions: 22
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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