Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9a16
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81067-4|CAB02976.2|  632|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF100663-3|AAC68980.1|  529|Caenorhabditis elegans Udp-glucurono...    29   2.5  
AF100663-2|AAC68981.2|  532|Caenorhabditis elegans Udp-glucurono...    28   7.6  
AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine re...    28   7.6  

>Z81067-4|CAB02976.2|  632|Caenorhabditis elegans Hypothetical
           protein F23A7.5 protein.
          Length = 632

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 395 PRTVQAHARTSIGHQRNATVDYKLLHQHDEFARIQNSPHGYAAARQGAQ 541
           PR  + HA  S  H+R+ TV  +L H++    R + S   + ++ + +Q
Sbjct: 270 PRDPRRHANGSSSHRRDKTVSDELQHENSHTPRQEESQSTFGSSFRPSQ 318


>AF100663-3|AAC68980.1|  529|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein20 protein.
          Length = 529

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 513 VMLPR-DKELKNIRKKEKNLMLKNVIDTILNFINDKIKMLNGDYVHD 650
           V++P  DK LK   K  KN+++    + I NF+  +  ML   ++ D
Sbjct: 50  VLIPVFDKALKTSLKSTKNVIMLQPTEDIANFVKGRATMLKNIWLQD 96


>AF100663-2|AAC68981.2|  532|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein19 protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 510 MVMLPRDKELKNIRKKEKNLMLKNVIDTILNFINDKIKMLNGDYVHD 650
           +VM   D  +K   K  KN++  N  D +  F   + KMLN  +  D
Sbjct: 53  VVMPVFDDSIKTSLKSTKNIIFVNSSDDVAAFAKARTKMLNNLWTMD 99


>AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 19 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 689 HDAKHYRAPN*TAVVNIIAVEHFNFIINKI*YGIYYVFK 573
           + +KH    N   +VNII +  F   I+ I + +Y++F+
Sbjct: 109 YSSKHMLPSNVRVLVNIILILMFTHSIDMIIFHVYHIFR 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,024,551
Number of Sequences: 27780
Number of extensions: 348735
Number of successful extensions: 1044
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)