Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9a11
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.039
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 29 0.64
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 1.5
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 27 2.6
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr... 27 3.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 4.5
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 26 6.0
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 6.0
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos... 26 6.0
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 6.0
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 26 6.0
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom... 26 6.0
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 26 6.0
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 25 7.9
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 25 7.9
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 33.1 bits (72), Expect = 0.039
Identities = 20/87 (22%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Frame = +2
Query: 122 KLEA-MKEIRNKTITLERLKRSIMTEVRSGDQEGRCLAQYKR-EMELLQQEKMSHVEELR 295
K+E +KEI + + + L+ +++ S + R +YK+ E ELL++ +H ++
Sbjct: 95 KIEGYIKEIERLSNSNKNLQAAVLQMAVSDTDDPRLKEEYKQTEKELLREISGNHKSKIL 154
Query: 296 QIHADINAMETVIKQTEESMTRKLSSA 376
++ ++N ++ +K+ + MT+ + A
Sbjct: 155 KLEEELNDLKHSMKEMQLYMTKIIDKA 181
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 29.1 bits (62), Expect = 0.64
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +2
Query: 242 REMELLQQEKMSHVEELRQIHADINA-METVIKQTEESMTRKLSSASRLHEEYRPLKAEV 418
+E++L + +S +LR ++ +ETV + EE+ T+ + +R HEE +++
Sbjct: 36 KELQLENERLLSENIDLRTTAINLEEQLETVQNENEENKTKLAALLNRFHEETDNFLSKL 95
Query: 419 DLLRRQ 436
L +++
Sbjct: 96 SLCQQE 101
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.9 bits (59), Expect = 1.5
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Frame = +2
Query: 41 SNLKTGTYIFEPIVNKMTAENER---EIYHKLEAMKEIRNKTITLERLKRSIMTEVRSGD 211
S LK + V++ AE +R K MKE NK +L+ +++ +
Sbjct: 449 SQLKDEITSLKQTVSESEAERKRLFSSAQEKQLQMKETVNKLTSLQEQNNEFDRQLKEQE 508
Query: 212 QEGRCLAQYKREMELLQQEKMSHVEELRQIHADINAMETVIKQTEESMTRKLSS 373
++ + + E+ L +E+ ++LR + + +KQ E+ LSS
Sbjct: 509 EDLQNKEEELTELRKLLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNLSS 562
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/74 (21%), Positives = 33/74 (44%)
Frame = +2
Query: 257 LQQEKMSHVEELRQIHADINAMETVIKQTEESMTRKLSSASRLHEEYRPLKAEVDLLRRQ 436
+Q E S++ Q+ +I +++ + ++E R SSA + + ++ L+ Q
Sbjct: 437 MQTELDSYITSNSQLKDEITSLKQTVSESEAERKRLFSSAQEKQLQMKETVNKLTSLQEQ 496
Query: 437 YLGLERLPDLHEED 478
+R EED
Sbjct: 497 NNEFDRQLKEQEED 510
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 314 NAMETVIKQTEESMTRKLSSASRLHEEYRPLKAEV 418
N++E ++ ES + SS S LH + RPLK E+
Sbjct: 144 NSLEVPFRKRSESTS---SSLSGLHSDLRPLKTEL 175
>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 169
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +2
Query: 203 SGDQEGRCLAQYKREMELLQQEKMSHVEELRQIHADINAMETVIKQTEESMTRKLSSASR 382
S + G AQ+ EL +E H+E+ ++ A MET + + S+ K+ +
Sbjct: 3 SSNPRGIPPAQFFEFKELSMEEAQGHLEKFQEAIAKYKFMETSVVRRVASLDDKIPDIRK 62
Query: 383 LHEEYRPLK 409
+ + LK
Sbjct: 63 TLQSVQFLK 71
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +2
Query: 122 KLEAMKE-IRNKTITLERLKRSIMTEVRSGDQEGRCLAQYKREMELLQQEKMSHVEELRQ 298
+LE KE +R + +++ + ++ + Q+K +E + + LR
Sbjct: 951 ELERTKEKLRMAELEKSNIQQKYLASEKTLEMMNETHEQFKHLVESEISTREEKITSLRS 1010
Query: 299 IHADINAMETVIKQTEESMTRKLS 370
D+N V+K+ +ES +++L+
Sbjct: 1011 ELLDLNKRVEVLKEEKESSSKELA 1034
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 68 FEPIVNKMTAENEREIYHKL 127
F+ I NK+T E + ++H+L
Sbjct: 43 FDTITNKITVEEQENVHHRL 62
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 220 ALSSSVQTRDGAAAAGEDEPCGGTSTDTCRY 312
A +SS+ D A G D GGTSTD RY
Sbjct: 296 AKTSSLHADDKTPAIGFD--MGGTSTDVSRY 324
>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 325 NSNKADRREHDPQVVERVPSTRGVSTVEG*GGPAAETV 438
N+N + RE DP+ ER R + +G G E +
Sbjct: 215 NANPTNGRERDPRASERAERDREKAVEKGLSGATEEDI 252
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -2
Query: 355 HALFCLLYYCFHCINIGMYLSK 290
H + C CF C +GM L K
Sbjct: 397 HTIPCAAVLCFFCTTVGMVLRK 418
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 6.0
Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 15/130 (11%)
Frame = +2
Query: 35 FISNLKTGTYIFEPIVNKMTAENERE--------IYHKLEAMKEIRNKTITLERLKRSIM 190
FI + G +FE + +N R+ + H++ + EI K L++ K +
Sbjct: 87 FIFTVAGGAILFETWRARRKEKNRRDEVAEAILGLQHEIVRINEIMEKQFVLQKKKNELQ 146
Query: 191 TEV-------RSGDQEGRCLAQYKREMELLQQEKMSHVEELRQIHADINAMETVIKQTEE 349
+ + D+ + + + +RE+ L+Q S E+ + ETV ++ +
Sbjct: 147 SSTEEIDSTEKDFDELHKVILKVERELHTLRQNTPSQNEQAEATPSKEIPRETVSEKADH 206
Query: 350 SMTRKLSSAS 379
+ S S
Sbjct: 207 PPSSNTKSVS 216
>SPCC584.14 |mug160||conserved eukaryotic
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 344 EESMTRKLSSASRLHEEY--RPLKAEVDLLRRQYLGLERLPDLHEEDGSPI 490
EE T+++SSA H + + VDLL R Y+ + L +D S +
Sbjct: 221 EECFTKEISSAGLDHINHFSEIVMLGVDLLYRDYVSYDTTISLKNDDSSSL 271
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 6.0
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = +2
Query: 95 AENEREIYHKLEAMKEIRNKTITLERLKRSIMTEVRSGD--QEGRCLAQYKREM-ELLQQ 265
+EN+ EIY++ A+++ + +R KRS E G G L Q ++ L
Sbjct: 799 SENQLEIYNRYAALQKNQQLRRDDKRNKRSKNDEESDGKSLSAGHVLMQLRKAANHALLF 858
Query: 266 EKMSHVEELRQIHADINAMETVIKQTEE 349
K E+L+Q+ DI E E+
Sbjct: 859 RKFYDDEKLKQMAKDIMQEEQYKNANEQ 886
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 210 SPLRTSVMMLRFSLSRVIVLFLISFI 133
SP+ T +RF+ RV++L++IS +
Sbjct: 250 SPITTLPKAIRFTAHRVLLLYIISVL 275
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 145 YFLHRLQLVIYLSFVFSGHFIYYWLKNVRSGF 50
Y+ H L Y+ SG F+ +W ++SGF
Sbjct: 218 YWKHGLAFREYIVKGASGRFVGFWSAVIKSGF 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,393
Number of Sequences: 5004
Number of extensions: 36791
Number of successful extensions: 153
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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