Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9a09
         (370 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)               29   0.89 
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)                    29   0.89 
SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)                   29   1.6  
SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6)             28   2.7  
SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.6  
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_54969| Best HMM Match : Orthopox_F6 (HMM E-Value=4.4)               27   6.3  
SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59)                   27   6.3  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.3  
SB_1962| Best HMM Match : Leu_leader (HMM E-Value=5.2)                 26   8.3  

>SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)
          Length = 440

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -3

Query: 368 FFLNSVIYCTILHKLIVDDFHACWLTIPSSLWNSFLEVCRSSVG 237
           F L  VI+ T+++    D+ +  +L+IP  +W + + +  +  G
Sbjct: 331 FSLGVVIFATVIYYCEKDELNTSFLSIPDGMWYAIVTMTTTGYG 374


>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
          Length = 430

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 362 LNSVIYCTILHKLIVDDFHAC-WLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRL 192
           ++SV  C  +H + V     C +  + SSLW  F E+     G RC S  +FVT +RL
Sbjct: 314 MSSVRGCRYVHNVRVSLCTLCAFRYVHSSLW--FSELFGKRFGTRCRSCDKFVTERRL 369


>SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)
          Length = 321

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 263 LEVCRSSVGPRCDSDVRFVTFQRLCSK 183
           L  C SSV PR D+D R +TF+  C K
Sbjct: 291 LNHCTSSVPPRFDND-RQITFKEACKK 316


>SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6)
          Length = 190

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 263 LEVCRSSVGPRCDSDVRFVTFQRLCSK 183
           L  C SSV PR D+D R +TF   C K
Sbjct: 160 LNHCTSSVPPRFDND-RQITFTEACKK 185


>SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 263 LEVCRSSVGPRCDSDVRFVTFQRLCSK 183
           L  C SSV PR D+D R +TF   C K
Sbjct: 507 LNHCTSSVPPRFDND-RQITFTEACKK 532


>SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 183 FRAEALKRDESHVRVTPWANGRPAH 257
           FR   L   +S VR +PWA  RPA+
Sbjct: 105 FRGPPLFAPKSRVRASPWACTRPAY 129


>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 305 ACWLTIPSSLWNSFLEVCRSSVGPRC 228
           AC+L IP ++ N  ++ C++ V  +C
Sbjct: 69  ACYLDIPGNMVNEEVQACKAKVFSQC 94


>SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 263 LEVCRSSVGPRCDSDVRFVTFQRLCS 186
           L  C SSV PR D+D R +TF+  C+
Sbjct: 225 LNHCTSSVPPRFDND-RQITFKEACA 249


>SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 982

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 92  QNERLEASWFNLHKLLKHRSQGASQVTKARISSRGVET*RISRQSHTLGQRTTCTP 259
           +NER+ A+W  +++ LK  ++   + T  R++ R       SR S  +G + T  P
Sbjct: 152 RNERISATWMCVYRSLKQFAKVFGEETGGRMTIRSA-----SRHSIKVGPQETLIP 202


>SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1013

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 183 FRAEALKRDESHVRVTPWANGRPAH 257
           F A  L   +S VR +PWA  RPA+
Sbjct: 832 FAAPPLFAPKSRVRASPWACTRPAY 856


>SB_54969| Best HMM Match : Orthopox_F6 (HMM E-Value=4.4)
          Length = 130

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +3

Query: 24  LSGCGIQENFNLFLRIKVNKNINKMSAWRQAGLTYINYSNIAAKVLRRSLKQE 182
           L+ C + EN ++   + + +NI K        LTY ++      V++ ++K E
Sbjct: 60  LAQC-VNENIDIITNMDILRNIVKKKNRLDVNLTYASHQGRLVTVIQEAMKDE 111


>SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59)
          Length = 483

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 183 FRAEALKRDESHVRVTPWANGRPAH 257
           F A  L   +S VR +PWA  RPA+
Sbjct: 353 FAAPPLFAPKSRVRASPWACTRPAY 377


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 227  HTLGQRTTCTPPESCSKVKKE 289
            H  GQ    TPP+SCS + ++
Sbjct: 1227 HNYGQPPPMTPPDSCSPIPED 1247


>SB_1962| Best HMM Match : Leu_leader (HMM E-Value=5.2)
          Length = 140

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 72  KVNKNINKMSAWRQAGLTYINYSNIAAKVLRRS 170
           ++N ++NKMS+W       +N S   A +L  S
Sbjct: 32  ELNSSLNKMSSWSSTSHLLLNASKTKAMLLSTS 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,920,377
Number of Sequences: 59808
Number of extensions: 194898
Number of successful extensions: 497
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)