Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9a06
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    27   1.9  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.5  

>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
 Frame = +2

Query: 284 SNVVGKLALTELPFPLTMTAVQXXXXXXXXXXXXXXX----GVRSTRWPTNYWTRVLVPL 451
           SN   K    EL  P+T+T +Q                   G    + P+ Y     +PL
Sbjct: 17  SNTTSKSIFNELRCPVTLTFLQFGFVAFFSAVCLLFRKQFLGGTGIQKPSKYVLYTTLPL 76

Query: 452 AIAKLLTTLCSQVSIWKVPVSYAHT 526
           +I ++   +   ++  K+PVS  HT
Sbjct: 77  SIFQIGGHVFGSLATTKIPVSTVHT 101


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -3

Query: 198 FFLSESTLKQSCYHRITED--L*FNNSLLFRTIHEIILCNIYIFGNQACLNYIVM*HGTI 25
           F ++ +  + SC++ I     L  N  +    +++I LCN YI     C  YI+    T+
Sbjct: 13  FNVTNNNFQVSCFNPILLKIILFLNTIVCIFYVYKIALCNEYIRFLAKCFLYILRCMSTV 72

Query: 24  SFL 16
           S L
Sbjct: 73  SLL 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,307
Number of Sequences: 5004
Number of extensions: 62585
Number of successful extensions: 177
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)