Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9a06
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0312 - 7168332-7168408,7168492-7168621,7168793-7168861,716... 44 9e-05
08_01_0577 + 5132876-5132894,5134352-5134845,5134937-5135162,513... 43 3e-04
05_03_0110 + 8500204-8500460,8502544-8502612,8502725-8502790,850... 39 0.004
01_01_0508 + 3710435-3710980,3711086-3711238,3711323-3711408,371... 32 0.004
07_03_0649 - 20260501-20260512,20260620-20260833,20261207-202614... 38 0.007
07_03_0644 - 20242283-20242294,20242402-20242615,20242989-202432... 38 0.007
05_01_0502 + 4191443-4191769,4191770-4191892,4194161-4194313,419... 31 0.85
12_01_0727 + 6446283-6449300 29 2.6
03_02_0650 + 10174905-10175000,10175321-10175376,10175467-101755... 29 2.6
08_02_0305 + 15586044-15586073,15586846-15586968,15587060-155872... 29 3.4
01_01_0977 - 7717808-7717837,7718227-7718327,7718449-7718548,771... 29 4.5
08_02_1420 + 26942777-26942905,26944415-26944511,26944596-269449... 28 6.0
12_01_0654 - 5542349-5542480,5542491-5542666,5542835-5542937,554... 28 7.9
11_04_0093 + 13407686-13409554 28 7.9
05_05_0106 + 22435192-22435614,22436880-22436968,22437617-224378... 28 7.9
>09_02_0312 -
7168332-7168408,7168492-7168621,7168793-7168861,
7168947-7169066,7169356-7169440,7169565-7169650,
7169762-7169914,7170008-7170130,7170974-7171357
Length = 408
Score = 44.4 bits (100), Expect = 9e-05
Identities = 27/103 (26%), Positives = 45/103 (43%)
Frame = +2
Query: 218 GSRRETLIVGFLCAAWYMLSSASNVVGKLALTELPFPLTMTAVQXXXXXXXXXXXXXXXG 397
G +TL +G L WY+ + N+ K L P+P+ +T VQ G
Sbjct: 100 GGLAKTLQLGALFGLWYLFNIYFNIYNKQVLKVFPYPINITNVQ-FAVGTVIALFMWITG 158
Query: 398 VRSTRWPTNYWTRVLVPLAIAKLLTTLCSQVSIWKVPVSYAHT 526
+ + ++PLA+ + L + +S+ KV VS+ HT
Sbjct: 159 ILKRPKISGAQLAAILPLAMVHTMGNLFTNMSLGKVAVSFTHT 201
>08_01_0577 +
5132876-5132894,5134352-5134845,5134937-5135162,
5135695-5135917,5136315-5136528,5136769-5136806,
5136977-5137142
Length = 459
Score = 42.7 bits (96), Expect = 3e-04
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
Frame = +2
Query: 170 CFRVLSDKKKSAMGTTGSRRET---LIVGFLCAAWYMLSSASNVVGKLALTELPFPLTMT 340
C +D K+S R E L + A W+ L+ N+ K L P+P +
Sbjct: 77 CAASAADDKESKTEVVPVRSEAAQKLKISIYFATWWALNVIFNIYNKKVLNAFPYPWLTS 136
Query: 341 AVQXXXXXXXXXXXXXXXGVRSTRWPTNYWTRVLVPLAIAKLLTTLCSQVSIWKVPVSYA 520
+ V + + ++W +VL P+A+A + + + VS+ KV VS+
Sbjct: 137 TLSLACGSAMMLVSWATRLVEAPKTDLDFW-KVLFPVAVAHTIGHVAATVSMSKVAVSFT 195
Query: 521 H 523
H
Sbjct: 196 H 196
>05_03_0110 +
8500204-8500460,8502544-8502612,8502725-8502790,
8502885-8502963,8504270-8504390,8504486-8504581,
8505403-8505515,8505612-8505689,8507777-8507893,
8508194-8508293,8508463-8508563,8509093-8509110
Length = 404
Score = 38.7 bits (86), Expect = 0.004
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = +2
Query: 224 RRETLIVGFLCAAWYMLSSASNVVGKLALTELPFPLTMTAVQXXXXXXXXXXXXXXXGVR 403
R L+ GF WY L+ N++ K P+P +V G+
Sbjct: 96 RYPALVTGFFFFMWYFLNVIFNILNKKIFDYFPYPY-FVSVSHLLVGVLYCLVGWSFGL- 153
Query: 404 STRWPTNYWT-RVLVPLAIAKLLTTLCSQVSIWKVPVSYAHT 526
R P N ++L P+A+ + + S VS V VS+AHT
Sbjct: 154 PKRAPINSTVLKLLFPVAVCHAIGHVTSTVSFAAVAVSFAHT 195
>01_01_0508 +
3710435-3710980,3711086-3711238,3711323-3711408,
3711533-3711617,3711705-3711824,3711906-3711974,
3712088-3712217,3712336-3712406
Length = 419
Score = 32.3 bits (70), Expect(2) = 0.004
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +2
Query: 308 LTELPFPLTMTAVQXXXXXXXXXXXXXXXGVRSTRWPTNYWTRVLVPLAIAKLLTTLCSQ 487
L LPFP T+TA Q + R + ++ PLA +L T+ +
Sbjct: 143 LQPLPFPYTITAFQLAFGSFVIFLMWALKLHPAPRISISQLAKI-APLAAGHMLGTVFTN 201
Query: 488 VSIWKVPVSYAHT 526
+S+ KV VS+ HT
Sbjct: 202 MSLSKVAVSFTHT 214
Score = 25.4 bits (53), Expect(2) = 0.004
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 188 DKKKSAMGTTGSRRETLIVGFLCAAWYMLSSASNVVGK 301
D +A G+ ET +G + AWY+L+ N+ K
Sbjct: 77 DADAAAGRERGALAETAQLGAMIVAWYLLNIYFNIYNK 114
>07_03_0649 -
20260501-20260512,20260620-20260833,20261207-20261429,
20261706-20261931,20262051-20262494
Length = 372
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/94 (23%), Positives = 39/94 (41%)
Frame = +2
Query: 242 VGFLCAAWYMLSSASNVVGKLALTELPFPLTMTAVQXXXXXXXXXXXXXXXGVRSTRWPT 421
+G A W+ L+ N+ K L P+P + + +
Sbjct: 81 IGVYFATWWALNVIFNIYNKKVLNAFPYPWLTSTLSLAAGSAIMLASWATRIAEAPATDL 140
Query: 422 NYWTRVLVPLAIAKLLTTLCSQVSIWKVPVSYAH 523
++W + L P+AIA + + + VS+ KV VS+ H
Sbjct: 141 DFW-KALSPVAIAHTIGHVAATVSMAKVAVSFTH 173
>07_03_0644 -
20242283-20242294,20242402-20242615,20242989-20243211,
20243488-20243713,20243833-20244276
Length = 372
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/94 (23%), Positives = 39/94 (41%)
Frame = +2
Query: 242 VGFLCAAWYMLSSASNVVGKLALTELPFPLTMTAVQXXXXXXXXXXXXXXXGVRSTRWPT 421
+G A W+ L+ N+ K L P+P + + +
Sbjct: 81 IGVYFATWWALNVIFNIYNKKVLNAFPYPWLTSTLSLAAGSAIMLASWATRIAEAPATDL 140
Query: 422 NYWTRVLVPLAIAKLLTTLCSQVSIWKVPVSYAH 523
++W + L P+AIA + + + VS+ KV VS+ H
Sbjct: 141 DFW-KALSPVAIAHTIGHVAATVSMAKVAVSFTH 173
>05_01_0502 +
4191443-4191769,4191770-4191892,4194161-4194313,
4194420-4194505,4194648-4194732,4194871-4194990,
4195066-4195134,4195351-4195506
Length = 372
Score = 31.1 bits (67), Expect = 0.85
Identities = 20/77 (25%), Positives = 32/77 (41%)
Frame = +2
Query: 296 GKLALTELPFPLTMTAVQXXXXXXXXXXXXXXXGVRSTRWPTNYWTRVLVPLAIAKLLTT 475
G L +PFP T+T Q R + ++L PLA+ +
Sbjct: 107 GLQVLKSVPFPYTITTFQFASGSFFITLMWLLNLHPKPRLSLGQYAKIL-PLALVHTMGN 165
Query: 476 LCSQVSIWKVPVSYAHT 526
+ + +S+ KV VS+ HT
Sbjct: 166 VFTNMSLGKVAVSFTHT 182
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = -3
Query: 672 IPYSTTLFIRFGSSRLLSFA*TQITTLWHHFHSVEDINENLWQELNSIPVWA*ETGT--F 499
+PY + F+R S + SF + H H + ++ + Q +IP WA +T T F
Sbjct: 496 VPYPSISFLRLASCSISSFP-----NILRHLHEIAFLDLSYNQIQGAIPQWAWKTSTQGF 550
Query: 498 QMETCEHSVVRSL 460
+ H+ S+
Sbjct: 551 ALFNLSHNKFTSI 563
>03_02_0650 +
10174905-10175000,10175321-10175376,10175467-10175540,
10176215-10176753,10176845-10177186,10177520-10177879,
10177982-10178193,10178881-10179169,10179469-10180152
Length = 883
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +1
Query: 331 NYDSGTAVCSGLAECTRASPVWSTFDAMADELLDPCLSTLGDRQTSYHTVLASFHLESAS 510
NY+SG AV L + + S STFD A + D L R+ Y +E A
Sbjct: 500 NYNSGNAVAYALLDGNKQSAFLSTFDKSAFKSSDKLLLAYKPRRGRYAVYDNEVTMEEAE 559
Query: 511 LL 516
L
Sbjct: 560 SL 561
>08_02_0305 +
15586044-15586073,15586846-15586968,15587060-15587212,
15587313-15587398,15588327-15588411,15588796-15588864,
15589261-15589326
Length = 203
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +2
Query: 302 LALTELPFPLTMTAVQXXXXXXXXXXXXXXXGVRSTRWPTNYWTRVLVPLAIAKLLTTLC 481
+ L P+P+ +T VQ +R + +L PLA+ + L
Sbjct: 10 MVLKVFPYPINITTVQFAVGTVVALFMWITGILRRPKISGAQLFAIL-PLAVVHTMGNLF 68
Query: 482 SQVSIWKVPVSYAHT 526
+ +S+ KV VS+ HT
Sbjct: 69 TNMSLGKVAVSFTHT 83
>01_01_0977 -
7717808-7717837,7718227-7718327,7718449-7718548,
7718706-7718822,7718913-7718990,7719980-7720058,
7720184-7720249,7720373-7720441,7720890-7721188
Length = 312
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 236 LIVGFLCAAWYMLSSASNVVGKLALTELPFPLTMTAV 346
LI GF WY L+ N++ K P+P ++ +
Sbjct: 114 LITGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVI 150
>08_02_1420 +
26942777-26942905,26944415-26944511,26944596-26944962,
26945286-26945793
Length = 366
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 460 QTSYHTVLASFHLESASLLCPH 525
QTSYHTV + S+SL+CP+
Sbjct: 73 QTSYHTVGDHSNAASSSLVCPY 94
>12_01_0654 -
5542349-5542480,5542491-5542666,5542835-5542937,
5542971-5543084,5543104-5543163,5543258-5544316
Length = 547
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +1
Query: 319 TISTNYDSGTAVCSGLAECTRASPVWSTFDAMADEL 426
++STN+++ T + + T + P + T+DA+ + L
Sbjct: 262 SVSTNFNAETLISKIIQSVTLSKPSFDTYDALQEHL 297
>11_04_0093 + 13407686-13409554
Length = 622
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +1
Query: 211 YNRLQARDTNSWLPVRSVVYVKFSQ*CRGQTGINRATISTNYDSGTAVCSGLAECTRASP 390
+NR+ RD SW + V+ R + R + + S T + SGLA
Sbjct: 158 FNRMPVRDAGSW-NILLCGLVRSGSLERARKMFERMPVR-DVMSWTTMISGLARNGSVDD 215
Query: 391 VWSTFDAMAD 420
W FDAM +
Sbjct: 216 AWVLFDAMPE 225
>05_05_0106 +
22435192-22435614,22436880-22436968,22437617-22437814,
22438475-22438679,22438749-22438916,22439095-22439262,
22439344-22439534,22440776-22440879,22441285-22441298
Length = 519
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 682 NSTNTILNHIIHQIWVQPTSFFRLNSNYHFV 590
N+T I N H IW P++F + HFV
Sbjct: 153 NATLVIPNFHFHSIWRDPSTFSDIYDEAHFV 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,881,408
Number of Sequences: 37544
Number of extensions: 393583
Number of successful extensions: 1089
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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