Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9a06
(683 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_15229| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5) 29 2.7
SB_29192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0) 29 3.5
SB_44531| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_31583| Best HMM Match : Granulin (HMM E-Value=7.6) 28 6.1
SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35) 28 8.1
SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83) 28 8.1
>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1925
Score = 65.7 bits (153), Expect = 3e-11
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Frame = +2
Query: 221 SRRETLIVGFLCAAWYMLSSASNVVGKLALTELPFPLTMTAVQXXXXXXXXXXXXXXXGV 400
S E+L V L ++ +SS +NV+ K L + P P+T+ VQ V
Sbjct: 1589 SSSESLFVAILHRSFPAVSSTNNVITKRLLNKFPHPVTVAFVQVFSTALFMGPTLVLWRV 1648
Query: 401 -RSTRWPTNYWTRVLVPLAIAKLLTTLCSQVSIWKVPVSYAHTG--IEFSSCH-KFSFMS 568
+++ P + + +VPL+ K L + + VSIWKVPVSYAHTG SC K +F
Sbjct: 1649 PKNSAIPKTTFYKFIVPLSFGKALAAVSAYVSIWKVPVSYAHTGHNANIHSCFIKINFRP 1708
Query: 569 ST 574
T
Sbjct: 1709 KT 1710
>SB_15229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 470 TTLCSQVSI-WKVPVSYAHTGIEFSSCHKFSF 562
+T+C I W+V + Y H G+ ++CH F
Sbjct: 52 STMCITECIQWRVTIFYVHYGMHLTACHHLLF 83
>SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)
Length = 331
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 470 TTLCSQVSI-WKVPVSYAHTGIEFSSCHKFSF 562
+T+C I W+V + Y H G+ ++CH F
Sbjct: 52 STMCITECIQWRVTIFYVHYGMHLTACHHLLF 83
>SB_29192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Frame = -3
Query: 345 TAVIVSGNGSSVNASL--PTTLLAELNIYHAAHRKPTISVSRLEPVVPIALFFLSESTL- 175
T++ +G+ + + A + T LA +IY A H P + S+L + + L STL
Sbjct: 142 TSIAYTGSVARIVAKVNSDTIALARWSIYRALHLNPAVEHSQLPDGTHLLISCLRPSTLT 201
Query: 174 ----KQSCYHRITEDL*FNNSLLF 115
K S Y R+ + +LLF
Sbjct: 202 RLFQKPSRYQRVLQSRDTLTNLLF 225
>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 726
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 452 AIAKLLTTLCSQVSIWKVP-VSYAHTGIEFSSCHKFSFMSST 574
A+ + + S + ++KVP +SYA T E S H+F + T
Sbjct: 98 AMLYAIDLVASLLRLFKVPQISYAATSTELSDTHRFDYFMRT 139
>SB_44531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -3
Query: 360 AAHSCTAVIVSGNGSSVNASLPTTLLAELNIYHAAHRKPTISVS 229
A H AV++S NG++ ++ IYH PT S
Sbjct: 66 ATHGTPAVLISNNGTNYSSQEFREFTKAWEIYHVTRNSPTPGTS 109
>SB_31583| Best HMM Match : Granulin (HMM E-Value=7.6)
Length = 169
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = -3
Query: 474 VVRSLAIAKGTKTRVQ*F-VGHRVERTPHRASAGTLSEAA-AHSCTAVIVSGNGSSVNAS 301
+V LA+ + R + F +G+ +E T + S L + AHS T G G ++ ++
Sbjct: 48 IVSKLAMERIDGVRARLFELGYTLESTMNDGSDTRLHQFHHAHSSTTPTGKGGGYTMEST 107
Query: 300 LPTTLLAELNIYHAAHR 250
+ + L+ +H AHR
Sbjct: 108 MNDCSNSRLHQFHHAHR 124
>SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1514
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -1
Query: 680 LNKYHTQPHYSSDLGPADFFLSPKLK----LPLCGTIFIQ 573
L Y T PH ++ P + ++ KLK L LCGTI Q
Sbjct: 1104 LLSYRTTPHATTGKTPGELLMNRKLKTRLDLWLCGTIIQQ 1143
>SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)
Length = 533
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 470 TTLCSQVSI-WKVPVSYAHTGIEFSSCH 550
+T+C I W+V +SY H G+ +CH
Sbjct: 158 STMCITGCIQWRVIISYVHYGMHSMACH 185
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,209,185
Number of Sequences: 59808
Number of extensions: 482984
Number of successful extensions: 1326
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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