Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9a06
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46933-2|CAA87035.1|  101|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AC006791-4|AAM97974.1|  603|Caenorhabditis elegans Metabotropic ...    30   1.8  
AC006791-3|ABM01864.1|  906|Caenorhabditis elegans Metabotropic ...    30   1.8  
AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic ...    30   1.8  
AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic ...    30   1.8  
AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen pro...    28   5.4  
Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    27   9.4  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       27   9.4  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       27   9.4  

>Z46933-2|CAA87035.1|  101|Caenorhabditis elegans Hypothetical
           protein F34H10.2 protein.
          Length = 101

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = -1

Query: 287 YWLNLT----YTTLRTGSQLLVSRAWSRLYPL 204
           YW+N      Y   RT S+  VS+ W RLYPL
Sbjct: 41  YWVNRAMPNKYRKYRTYSRRSVSQRWKRLYPL 72


>AC006791-4|AAM97974.1|  603|Caenorhabditis elegans Metabotropic
           glutamate receptorfamily protein 3, isoform b protein.
          Length = 603

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +2

Query: 395 GVRSTRWPTNYWTR----VLVPLAIAKLLTTLCSQVSIWKVP-VSYAHTGIEFSSCHKFS 559
           GV      T  +TR     +V  A +++   + S + ++K+P VSY+ TG E S   +F+
Sbjct: 129 GVTCADGSTGSYTRQPVVAVVGAAGSQVSVMVASMLQLFKIPQVSYSSTGAELSEKPRFA 188

Query: 560 FMS 568
           F S
Sbjct: 189 FFS 191


>AC006791-3|ABM01864.1|  906|Caenorhabditis elegans Metabotropic
           glutamate receptorfamily protein 3, isoform c protein.
          Length = 906

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +2

Query: 395 GVRSTRWPTNYWTR----VLVPLAIAKLLTTLCSQVSIWKVP-VSYAHTGIEFSSCHKFS 559
           GV      T  +TR     +V  A +++   + S + ++K+P VSY+ TG E S   +F+
Sbjct: 129 GVTCADGSTGSYTRQPVVAVVGAAGSQVSVMVASMLQLFKIPQVSYSSTGAELSEKPRFA 188

Query: 560 FMS 568
           F S
Sbjct: 189 FFS 191


>AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic
           glutamate receptorfamily protein 3, isoform a protein.
          Length = 1042

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +2

Query: 395 GVRSTRWPTNYWTR----VLVPLAIAKLLTTLCSQVSIWKVP-VSYAHTGIEFSSCHKFS 559
           GV      T  +TR     +V  A +++   + S + ++K+P VSY+ TG E S   +F+
Sbjct: 129 GVTCADGSTGSYTRQPVVAVVGAAGSQVSVMVASMLQLFKIPQVSYSSTGAELSEKPRFA 188

Query: 560 FMS 568
           F S
Sbjct: 189 FFS 191


>AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic
           glutamate receptorfamily protein 3, isoform d protein.
          Length = 1044

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +2

Query: 395 GVRSTRWPTNYWTR----VLVPLAIAKLLTTLCSQVSIWKVP-VSYAHTGIEFSSCHKFS 559
           GV      T  +TR     +V  A +++   + S + ++K+P VSY+ TG E S   +F+
Sbjct: 129 GVTCADGSTGSYTRQPVVAVVGAAGSQVSVMVASMLQLFKIPQVSYSSTGAELSEKPRFA 188

Query: 560 FMS 568
           F S
Sbjct: 189 FFS 191


>AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen
           protein 71 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 423 FVGHRVERTPHRASAGTLSEAAAHSC 346
           FV   VE  PH A+ G+ SE   H C
Sbjct: 146 FVAVGVEEGPHTATTGSDSEGTCHDC 171


>Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical
           protein T07G12.6 protein.
          Length = 600

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 497 KWKLASTVW*EVWRSPRVLRHGSNSSSAIASNVLH 393
           K K  + VW E ++  RVL+HGS +     SN+LH
Sbjct: 536 KGKDLAKVWDECFKKNRVLQHGSGTD----SNLLH 566


>Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical
           protein C34B4.5 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -1

Query: 281 LNLTYTTLRTGSQLLVSR-AWSRLYPLRFFFYQKVL*SKVAITESLK-IFNSIIHYYSVQ 108
           L+    TL T S L+++   W+ L P++FF++   L     I  +L  +FN     +SV 
Sbjct: 50  LSTVTATLLTASFLIMAVFLWNHLKPMKFFWFLLQLTISAFILSTLNLVFNVPATLFSVA 109

Query: 107 YTR*FCVTYTFLVI 66
            T  F  T  +L++
Sbjct: 110 -TEQFVQTNLYLIM 122


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 289 CRGQTGINRATISTNYDSGTAVCSGLAECTRASPVWSTFD 408
           CRG++      I + YD+ T +C      TRA   W  FD
Sbjct: 363 CRGRS----RNIFSEYDTCTTMCEETNVLTRAEVCWDKFD 398


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 289 CRGQTGINRATISTNYDSGTAVCSGLAECTRASPVWSTFD 408
           CRG++      I + YD+ T +C      TRA   W  FD
Sbjct: 363 CRGRS----RNIFSEYDTCTTMCEETNVLTRAEVCWDKFD 398


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 289 CRGQTGINRATISTNYDSGTAVCSGLAECTRASPVWSTFD 408
           CRG++      I + YD+ T +C      TRA   W  FD
Sbjct: 363 CRGRS----RNIFSEYDTCTTMCEETNVLTRAEVCWDKFD 398


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,598,812
Number of Sequences: 27780
Number of extensions: 354281
Number of successful extensions: 911
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)