Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9a05
         (258 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   1.7  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    24   2.9  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    24   3.8  
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    23   6.7  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    23   6.7  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    23   8.9  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 1   SEASISKQSEPAKKKTVVPEDKFDSD 78
           S     K  +P K K ++P+ +FD D
Sbjct: 46  SSILFDKNKKPLKPKIIIPDKEFDLD 71


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 16  SKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYGL 126
           +K S+PA +  V+P   F S  S  P+ EG+  +  L
Sbjct: 284 TKNSKPAGQ--VIPSSPFTSTLSRFPSLEGAVSEISL 318


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 104 PSVAGAFDSSLSNLSSGTTVFFFAGSDCLLILA 6
           PS+ G+   S++  + G    +F G+ CLL +A
Sbjct: 64  PSLVGSMAFSMNCGAGGMVWSWFVGATCLLPIA 96


>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 190 RAKFVVKTYVYFINKYSFSV 249
           RA ++   YVYF+NK   SV
Sbjct: 234 RADYMYLGYVYFLNKLKPSV 253


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 1   SEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGST 111
           SE + SKQ+E  +  +V    +  + ES  P + GST
Sbjct: 127 SEPANSKQNEVVEATSVEKAKENVAHESGTPESGGST 163


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 25  SEPAKKKTVVPEDKFDSDESNAPATEGSTVD 117
           ++PA   T VP++K        P  +GS ++
Sbjct: 485 TQPAASATPVPKEKPSEKSEKPPKKKGSKLE 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 836,768
Number of Sequences: 5004
Number of extensions: 13286
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)