Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9a05
         (258 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0019 - 10656005-10657511,10657712-10658739                       27   2.1  
05_03_0657 + 16694833-16694963,16695567-16695684,16696280-166963...    26   3.6  
07_03_0557 + 19447367-19447517,19447630-19447730,19448359-194484...    25   6.3  
10_02_0094 - 5228472-5228703,5229040-5229133,5230627-5230675,523...    25   8.4  
09_03_0025 - 11665969-11666417,11666490-11666594,11666667-116668...    25   8.4  
08_02_0883 + 22229278-22230009                                         25   8.4  
07_03_0544 + 19309026-19310105                                         25   8.4  

>06_02_0019 - 10656005-10657511,10657712-10658739
          Length = 844

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 251 FTENEYLFIKYTYVLTTNFAR*FKLIFININLNKY 147
           F+ N Y F  + Y  TT+F     LI + +N N Y
Sbjct: 540 FSNNPYRFKAFFYCNTTSFMSSIALIILLVNPNLY 574


>05_03_0657 +
           16694833-16694963,16695567-16695684,16696280-16696376,
           16700126-16700232,16700473-16700595,16700791-16700944,
           16701237-16701297,16701417-16701781,16701875-16703483,
           16703697-16703940
          Length = 1002

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 61  DKFDSDESNAPATEGSTVDYGL*KKKINSYLFKLI 165
           DK DSD S  P  +GST    L K K  SY   ++
Sbjct: 535 DKNDSDTSKTPLPDGSTDSSSLSKTK-RSYRINIL 568


>07_03_0557 +
           19447367-19447517,19447630-19447730,19448359-19448480,
           19448725-19448912,19449000-19449178,19449370-19449711,
           19449795-19449859,19450259-19450317,19450486-19450573,
           19450653-19450722,19450759-19450992,19451072-19451411,
           19451643-19451691,19452690-19452780,19453077-19453442
          Length = 814

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 101 SVAGAFD-SSLSNLSSGTTVFFFAGSDCLLI 12
           S  G FD S+L  L + +T+FFFA    L +
Sbjct: 639 SAPGPFDDSTLRKLLNSSTIFFFASRGILAL 669


>10_02_0094 -
           5228472-5228703,5229040-5229133,5230627-5230675,
           5231229-5231321,5231404-5231635,5232416-5232506,
           5232693-5232784,5232862-5232970,5233331-5233430,
           5233614-5233754,5233846-5234010,5234088-5234279,
           5234409-5234537,5234619-5234734,5234821-5234965,
           5235039-5235102,5235241-5235463,5235584-5236244,
           5236909-5237250
          Length = 1089

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 10  SISKQSEPAKKKTVVPEDKFDSDESN 87
           S+SKQ+E  K     P++K DS+ +N
Sbjct: 248 SLSKQNEQTKNGQGPPDNKTDSEGAN 273


>09_03_0025 -
           11665969-11666417,11666490-11666594,11666667-11666856,
           11666933-11667120,11667240-11667571,11667654-11667940,
           11668027-11668911
          Length = 811

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +1

Query: 7   ASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYGL*KKKI 141
           + ++ Q+ P K+K V+ +D+ D D+S    +        + +KK+
Sbjct: 334 SKLADQTGPRKRKLVLDDDEGDDDKSGDKGSPNKPPKRTMPRKKL 378


>08_02_0883 + 22229278-22230009
          Length = 243

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 1   SEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDY 120
           S  SIS++ E A        D  D+  S+ P+T+G   DY
Sbjct: 130 SSYSISQRQEAAAPARSTSND--DTAMSSVPSTDGGAADY 167


>07_03_0544 + 19309026-19310105
          Length = 359

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 77  MSQMHQQQKDQLLTMGY 127
           M Q HQ Q D LL +GY
Sbjct: 200 MHQQHQSQVDHLLGLGY 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,613,107
Number of Sequences: 37544
Number of extensions: 62638
Number of successful extensions: 205
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)