Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9a04
         (166 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q06693 Cluster: Uncharacterized 12.5 kDa protein in VLF...    49   2e-05

>UniRef50_Q06693 Cluster: Uncharacterized 12.5 kDa protein in
           VLF1-GP41 intergenic region; n=12;
           Nucleopolyhedrovirus|Rep: Uncharacterized 12.5 kDa
           protein in VLF1-GP41 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 109

 Score = 48.8 bits (111), Expect = 2e-05
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   REQQQYSDSIDTDSPFVFNKLD 68
           REQQQYSDSIDTDSPFVFNK D
Sbjct: 88  REQQQYSDSIDTDSPFVFNKFD 109


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.285    0.109    0.270 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,883,199
Number of Sequences: 1657284
Number of extensions: 309400
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 575,637,011
effective HSP length: 34
effective length of database: 519,289,355
effective search space used: 10385787100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 18 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 45 (21.7 bits)