Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9a04
         (166 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8023| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  

>SB_8023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 54  KQKENQCQYYPNIV 13
           K+ + QCQYYPN +
Sbjct: 135 KRSKAQCQYYPNSI 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.285    0.109    0.270 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,346
Number of Sequences: 59808
Number of extensions: 12881
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 16,821,457
effective HSP length: 34
effective length of database: 14,787,985
effective search space used: 295759700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 18 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 45 (21.7 bits)