Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8p20
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 27 1.8
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.4
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p... 27 2.4
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||... 27 3.2
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 5.5
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 7.3
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 25 7.3
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 25 7.3
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T... 25 9.7
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 9.7
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 27.5 bits (58), Expect = 1.8
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +2
Query: 185 LASLLQREAL---CDVTLACDGETVKAHQTILSACSPYFESIFLQNSHPHPIIFLKDVRF 355
+ SLL AL D+ A V AH+ L+A S YF+S F + I +K F
Sbjct: 154 ITSLLSNSALHFTTDIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEIEVK--HF 211
Query: 356 A-EMKSLLDFMY 388
A E +S+L ++Y
Sbjct: 212 AKEFESILRYLY 223
>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 511
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -1
Query: 135 WSIVGANVSERAFAKILPSQTPPDPYLALSF 43
W++V +SE+ FAK +P++ + +L ++
Sbjct: 276 WNVVPKQLSEKRFAKYVPTKEMVESFLLFAY 306
>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -1
Query: 531 FSAPTTGVDRSSDFGFNVLFSVKPLTCKLSAVFRNIGSIFWPTFTSPLYIKSSNDF 364
FS G ++ F + SVK ++ + NI +F PTF L +S +DF
Sbjct: 67 FSMAEVGFAMGNNINFEIQQSVKQPRLRVRSKQENISGVFLPTFEMNL-DESIDDF 121
>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 237
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/59 (20%), Positives = 30/59 (50%)
Frame = +2
Query: 269 LSACSPYFESIFLQNSHPHPIIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTAE 445
+ +C S Q+++ ++ + +F +++L++ G+ + G+N + FLK E
Sbjct: 4 IHSCLDLIRSQIQQSANGRNVLLVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVE 62
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 530 SPRPPLASIALPTSDSMYCSLSNL*LV 450
S PPL+ ++LPT D Y S+ + L+
Sbjct: 257 SESPPLSPLSLPTDDLYYQSIEDKSLI 283
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +3
Query: 225 LSLVMERQSRHTRQYYQHAHHILKAY 302
L + M+R ++ T++ Y++A +L+AY
Sbjct: 1063 LVVSMQRYAKFTKEEYENAEFLLRAY 1088
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -2
Query: 146 SRIAGPLL--VLMSVN-VHLQKFCHHKRHPTPTLHCLFDHTHISI 21
S + GP L L ++N +H QKF H RH LH H H SI
Sbjct: 47 SLLQGPELKTALDNLNFIHKQKFEHQFRHGYWKLHPHPHHQHDSI 91
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 395 EVNVGQNMLPMFLKTAESLQVRGLTENNTLNPKSEE 502
EVN GQN + A ++ L E T +PK EE
Sbjct: 225 EVNFGQNPFLYDIDYAIQMEKNKLFEQATKSPKQEE 260
>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 107 SLTLAPTMDQQFCLRWNNHPNNLTDVLASLLQREALCDVT 226
+L PTM+ FC + N P N+ ++ L E D T
Sbjct: 168 ALQYIPTMNCIFCAQKKNIPINVCNIEGGTLFLEQAADAT 207
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 194 LLQREALCDVTLACDGETVKAHQTILSACSPYFESIF 304
+L E + V DGE +KAH LS S YF S F
Sbjct: 752 VLCEETMDTVIKLKDGE-LKAHGLFLSLRSEYFSSYF 787
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,442
Number of Sequences: 5004
Number of extensions: 51135
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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