Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8p20
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.     132   3e-33
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.         125   3e-31
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      44   2e-06
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   6.0  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   6.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.9  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score =  132 bits (319), Expect = 3e-33
 Identities = 59/122 (48%), Positives = 81/122 (66%)
 Frame = +2

Query: 134 QQFCLRWNNHPNNLTDVLASLLQREALCDVTLACDGETVKAHQTILSACSPYFESIFLQN 313
           Q FCLRWNN+ +++T    +L   E   DVTLACDG ++KAH+ +LSACSPYF  +    
Sbjct: 5   QHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKST 64

Query: 314 SHPHPIIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTAESLQVRGLTENNTLNPK 493
              HP+I L+DV F+++ +L++F+Y GEVNV Q  L  FLKTAE L+V GLT+      +
Sbjct: 65  PCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLTQQADQTDR 124

Query: 494 SE 499
            E
Sbjct: 125 DE 126


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score =  125 bits (302), Expect = 3e-31
 Identities = 60/130 (46%), Positives = 87/130 (66%), Gaps = 3/130 (2%)
 Frame = +2

Query: 134 QQFCLRWNNHPNNLTDVLASLLQREALCDVTLACDGETVKAHQTILSACSPYFESIFLQN 313
           Q +CLRWNN+ +N+T V   LLQ EA  DVTLAC+  ++KAH+ +LSACS YF+ + L N
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSN 68

Query: 314 SHPHP-IIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTAESLQVRGLTE--NNTL 484
              HP II  +DV F ++K +++F+Y+GE++V Q  L   LKTA+ L+++GL E   +  
Sbjct: 69  PCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRD 128

Query: 485 NPKSEERSTP 514
            P S   S+P
Sbjct: 129 GPPSVSLSSP 138



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -1

Query: 375 SNDFISANRTSLRNIMGCGCEFCRNMLSKYGEHAD 271
           +ND  + N  S  N    G  FC   L  YG H D
Sbjct: 254 ANDNGNGNGASNNN--NNGDMFCHTGLGHYGHHPD 286


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +2

Query: 134 QQFCLRWNNHPNNLTDVLASLLQREALCDVTLACD 238
           Q FCLRWNN+ +++T    +L   E   DVTLAC+
Sbjct: 5   QHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 352 SYIFKEYNGMWMRILQEYA 296
           S+I + Y   W +I+Q+YA
Sbjct: 96  SHIQRTYPKEWSKIVQQYA 114


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 352 SYIFKEYNGMWMRILQEYA 296
           S+I + Y   W +I+Q+YA
Sbjct: 96  SHIQRTYPKEWSKIVQQYA 114


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 98  NARSLTLAPTMDQQFCLRWNN 160
           N   L   P++DQ + L W N
Sbjct: 591 NPVQLWYVPSLDQVWILNWRN 611


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,983
Number of Sequences: 438
Number of extensions: 3430
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)