Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8p15
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    67   2e-12
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    29   0.46 
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    27   2.4  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   5.6  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   7.5  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   7.5  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    25   9.9  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    25   9.9  

>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 31/78 (39%), Positives = 50/78 (64%)
 Frame = +1

Query: 163 LIENPDAFKSWLTSILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQLDVFLQQET 342
           L E+ +  K +L   LEP+ DAD + L+ Y  AL++ D   +E+R++   QL+ FL+QET
Sbjct: 5   LEEHAEYLKRYLEQALEPISDADASVLSDYAMALLRHDSSEEEVRQLCYSQLEDFLRQET 64

Query: 343 KPFVEMLFGSLEKQEYLK 396
            PFV+ +F  L ++ YL+
Sbjct: 65  IPFVDKIFDVLREKSYLE 82


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = -3

Query: 658 IDVFDDHLCHVENQRASLFSAEVGIQAPPAAQSAEPLRVSARSEAQP*VRPRGAGVEEQA 479
           +DV  +H+  + NQ A +    V + A   AQ+  P   S +S         G G+    
Sbjct: 649 VDVGKEHMSMIPNQTAPMIQPNVPVSANSPAQANTPAADSTKSGTIQPTNRNGEGLSYSP 708

Query: 478 H 476
           H
Sbjct: 709 H 709


>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 133  IVDFFSFSDMLIENPDAFKSWLTSILEPLCDADPAALAKYVYALVKKDKPVDELRE 300
            +  F   S M +E+    K    SILE L D  P+ + + V  +++  + + ELR+
Sbjct: 1101 LTHFLQVSVMGLEDEHYIKLVSLSILEKLVDCSPSIIDEQVDTILEALRKIIELRK 1156


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 625 ENQRASLFSAEVGIQAP 575
           ENQRA+LFS +V   AP
Sbjct: 618 ENQRAALFSEDVSYTAP 634


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 217 LCDADPAALAKYVYALVKKDKPVDELREVMMDQL 318
           L DADP    +YV   + ++   +ELR+ +  QL
Sbjct: 530 LGDADPVLAQRYVIESLPEEMQTEELRKELRVQL 563


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 203  DVNHDLKASGFSINISEKLKKSTILLFVI 117
            ++N++ +  GFSINI E L   +IL + I
Sbjct: 1139 ELNYENETEGFSINIREILDLLSILYYGI 1167


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 171 FY*HIGKTKKINNTFICNNPFK 106
           F+ +     K NN F+CN+P K
Sbjct: 50  FFSNFPGNSKANNHFLCNSPLK 71


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 243 EGCWICITKWFQYG 202
           E CW+C+  W ++G
Sbjct: 315 EFCWVCLGPWTEHG 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,241
Number of Sequences: 5004
Number of extensions: 47208
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)