Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8p15
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0289 - 2332454-2333011                                           31   1.1  
09_04_0160 + 15226762-15227032,15227138-15227373,15227469-152275...    29   3.3  
05_05_0222 - 23392577-23392952,23394212-23394304,23394773-23395146     29   3.3  
03_02_0509 - 9003330-9003446,9003587-9003673,9004113-9004280,900...    29   4.4  
03_06_0742 + 35900505-35900519,35901230-35901281,35901647-359017...    28   5.9  

>08_01_0289 - 2332454-2333011
          Length = 185

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = -3

Query: 463 SPTGVLSQVLVVEE*ASLAPDYVSDTLVSQGNQTAFQQMVWFPAGETHRVDPSSPHG 293
           S  GV+ Q+ V E  AS  P+ V+  + +          V + A E  RVDPSSP G
Sbjct: 40  STAGVMWQLCVRELGASPEPEEVTGFVAAAMRANREAYGVSYDAAEKVRVDPSSPAG 96


>09_04_0160 +
           15226762-15227032,15227138-15227373,15227469-15227565,
           15227657-15227783,15227870-15228482,15228572-15228835,
           15228918-15229130,15229253-15229460,15229552-15229748,
           15229830-15230183,15230287-15230874
          Length = 1055

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 24/78 (30%), Positives = 38/78 (48%)
 Frame = +1

Query: 115 IITNKSIVDFFSFSDMLIENPDAFKSWLTSILEPLCDADPAALAKYVYALVKKDKPVDEL 294
           II    ++ FF    +L   PDA   WLTSI   +C+   A    ++     K  P+D  
Sbjct: 270 IILRLVVLGFFLRYRILHPVPDAIPLWLTSI---ICEIWFA--VSWILDQFPKWYPID-- 322

Query: 295 REVMMDQLDVFLQQETKP 348
           RE  +D+L +  ++E +P
Sbjct: 323 RETYLDRLSLRYEREGEP 340


>05_05_0222 - 23392577-23392952,23394212-23394304,23394773-23395146
          Length = 280

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -2

Query: 590 WYTGSSSSSVGRAFTSVCSVGGAALGTTTRCRSGGAG 480
           +Y GSSSSS G    +V SV GA     T+ R G  G
Sbjct: 85  YYCGSSSSSGGAGPAAVTSVSGAGGERKTKRRRGKHG 121


>03_02_0509 -
           9003330-9003446,9003587-9003673,9004113-9004280,
           9004835-9004957,9005081-9005170,9005275-9005295
          Length = 201

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/85 (23%), Positives = 38/85 (44%)
 Frame = +1

Query: 121 TNKSIVDFFSFSDMLIENPDAFKSWLTSILEPLCDADPAALAKYVYALVKKDKPVDELRE 300
           T K   +     DM     D  K W+ + +  L   +   L  ++Y L+ ++K  D  + 
Sbjct: 27  TQKFAPELEHLVDMTKVKMDVMKPWIATRVTELLGFEDEVLINFIYGLL-EEKEADGKK- 84

Query: 301 VMMDQLDVFLQQETKPFVEMLFGSL 375
            +  QL  F+++ T  F++ L+  L
Sbjct: 85  -IQIQLTGFMEKNTVKFMKELWSLL 108


>03_06_0742 +
           35900505-35900519,35901230-35901281,35901647-35901772,
           35902303-35902613,35902745-35902988,35903726-35903976,
           35904071-35904277,35904546-35904713,35904798-35905127,
           35905266-35905400
          Length = 612

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 124 NKSIVDFFSFSDMLIENPDAFKSWLTSILEPLCDADPAALAKYVYALVKKDKPVDELRE 300
           N  +  F+ + D+  + PDA    L   L+ + + DP  +  Y   L+KK   V EL+E
Sbjct: 398 NPMLERFYRYLDLKSKQPDANVPPLDKCLKKITEPDPDVI-DYQAPLIKKLGNVFELKE 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,418,628
Number of Sequences: 37544
Number of extensions: 335296
Number of successful extensions: 1176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)