Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8p15
(669 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC009537-1|AAH09537.1| 140|Homo sapiens Unknown (protein for IM... 106 6e-23
BC111697-1|AAI11698.1| 983|Homo sapiens RBM26 protein protein. 106 8e-23
BC041655-1|AAH41655.1| 980|Homo sapiens RNA binding motif prote... 106 8e-23
AL159974-2|CAI12923.3| 980|Homo sapiens RNA binding motif prote... 106 8e-23
AL139006-2|CAI95137.2| 980|Homo sapiens RNA binding motif prote... 106 8e-23
AL159974-1|CAI12921.2| 1008|Homo sapiens RNA binding motif prote... 101 2e-21
AL139006-1|CAI95136.1| 1008|Homo sapiens RNA binding motif prote... 101 2e-21
AB005297-1|BAA23647.1| 1584|Homo sapiens BAI 1 protein. 33 0.70
Y15758-1|CAC17466.1| 683|Homo sapiens LB1 protein. 31 3.7
EF560732-1|ABQ59042.1| 683|Homo sapiens CKAP2 protein protein. 31 3.7
BC130296-1|AAI30297.1| 682|Homo sapiens cytoskeleton associated... 31 3.7
AY062261-1|AAL47212.1| 682|Homo sapiens tumor-associated microt... 31 3.7
AL359513-5|CAH71660.2| 682|Homo sapiens cytoskeleton associated... 31 3.7
AK022982-1|BAB14345.1| 682|Homo sapiens protein ( Homo sapiens ... 31 3.7
AK001611-1|BAA91788.1| 349|Homo sapiens protein ( Homo sapiens ... 31 3.7
AJ429398-1|CAD22295.1| 683|Homo sapiens cytoskeleton associated... 31 3.7
AF177227-1|AAG33675.1| 572|Homo sapiens CTCL tumor antigen se20... 31 3.7
BC018642-1|AAH18642.1| 524|Homo sapiens cell division cycle 25 ... 31 4.9
BC015325-1|AAH15325.1| 222|Homo sapiens ZH2C2 protein protein. 31 4.9
BC007401-1|AAH07401.1| 524|Homo sapiens cell division cycle 25 ... 31 4.9
AY137580-1|AAN11305.1| 484|Homo sapiens cell division cycle pro... 31 4.9
AF527417-1|AAM77917.1| 524|Homo sapiens cell division cycle 25A... 31 4.9
BC142977-1|AAI42978.1| 259|Homo sapiens hypothetical protein LO... 30 6.5
AK000132-1|BAA90963.1| 392|Homo sapiens protein ( Homo sapiens ... 30 6.5
AF533707-1|AAQ09020.1| 259|Homo sapiens unknown protein protein. 30 6.5
U88902-2|AAC79121.1| 467|Homo sapiens putative envelope protein... 30 8.6
AY050298-1|AAL11492.1| 402|Homo sapiens envelope protein protein. 30 8.6
AY050297-1|AAL11491.1| 402|Homo sapiens envelope protein protein. 30 8.6
AF108843-2|AAD34324.1| 584|Homo sapiens env protein protein. 30 8.6
>BC009537-1|AAH09537.1| 140|Homo sapiens Unknown (protein for
IMAGE:3892831) protein.
Length = 140
Score = 106 bits (255), Expect = 6e-23
Identities = 51/78 (65%), Positives = 59/78 (75%)
Frame = +1
Query: 160 MLIENPDAFKSWLTSILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQLDVFLQQE 339
MLIE+ DA KSWL +LEP+CDADP+ALA YV ALVKKDKP EL+ DQLDVFLQ+E
Sbjct: 1 MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKE 60
Query: 340 TKPFVEMLFGSLEKQEYL 393
T FV+ LF SL + YL
Sbjct: 61 TSGFVDKLFESLYTKNYL 78
>BC111697-1|AAI11698.1| 983|Homo sapiens RBM26 protein protein.
Length = 983
Score = 106 bits (254), Expect = 8e-23
Identities = 50/80 (62%), Positives = 63/80 (78%)
Frame = +1
Query: 154 SDMLIENPDAFKSWLTSILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQLDVFLQ 333
S M+IEN +A KSWL+ LEP+CDADP+ALAKYV ALVKKDK EL+ + +DQLDVFLQ
Sbjct: 3 SKMIIENFEALKSWLSKTLEPICDADPSALAKYVLALVKKDKSEKELKALCIDQLDVFLQ 62
Query: 334 QETKPFVEMLFGSLEKQEYL 393
+ET+ FVE LF ++ + YL
Sbjct: 63 KETQIFVEKLFDAVNTKSYL 82
>BC041655-1|AAH41655.1| 980|Homo sapiens RNA binding motif protein
26 protein.
Length = 980
Score = 106 bits (254), Expect = 8e-23
Identities = 50/80 (62%), Positives = 63/80 (78%)
Frame = +1
Query: 154 SDMLIENPDAFKSWLTSILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQLDVFLQ 333
S M+IEN +A KSWL+ LEP+CDADP+ALAKYV ALVKKDK EL+ + +DQLDVFLQ
Sbjct: 3 SKMIIENFEALKSWLSKTLEPICDADPSALAKYVLALVKKDKSEKELKALCIDQLDVFLQ 62
Query: 334 QETKPFVEMLFGSLEKQEYL 393
+ET+ FVE LF ++ + YL
Sbjct: 63 KETQIFVEKLFDAVNTKSYL 82
>AL159974-2|CAI12923.3| 980|Homo sapiens RNA binding motif protein
26 protein.
Length = 980
Score = 106 bits (254), Expect = 8e-23
Identities = 50/80 (62%), Positives = 63/80 (78%)
Frame = +1
Query: 154 SDMLIENPDAFKSWLTSILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQLDVFLQ 333
S M+IEN +A KSWL+ LEP+CDADP+ALAKYV ALVKKDK EL+ + +DQLDVFLQ
Sbjct: 3 SKMIIENFEALKSWLSKTLEPICDADPSALAKYVLALVKKDKSEKELKALCIDQLDVFLQ 62
Query: 334 QETKPFVEMLFGSLEKQEYL 393
+ET+ FVE LF ++ + YL
Sbjct: 63 KETQIFVEKLFDAVNTKSYL 82
>AL139006-2|CAI95137.2| 980|Homo sapiens RNA binding motif protein
26 protein.
Length = 980
Score = 106 bits (254), Expect = 8e-23
Identities = 50/80 (62%), Positives = 63/80 (78%)
Frame = +1
Query: 154 SDMLIENPDAFKSWLTSILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQLDVFLQ 333
S M+IEN +A KSWL+ LEP+CDADP+ALAKYV ALVKKDK EL+ + +DQLDVFLQ
Sbjct: 3 SKMIIENFEALKSWLSKTLEPICDADPSALAKYVLALVKKDKSEKELKALCIDQLDVFLQ 62
Query: 334 QETKPFVEMLFGSLEKQEYL 393
+ET+ FVE LF ++ + YL
Sbjct: 63 KETQIFVEKLFDAVNTKSYL 82
>AL159974-1|CAI12921.2| 1008|Homo sapiens RNA binding motif protein
26 protein.
Length = 1008
Score = 101 bits (243), Expect = 2e-21
Identities = 50/81 (61%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Frame = +1
Query: 154 SDMLIENPDAFKSWLTSILEPLC-DADPAALAKYVYALVKKDKPVDELREVMMDQLDVFL 330
S M+IEN +A KSWL+ LEP+C DADP+ALAKYV ALVKKDK EL+ + +DQLDVFL
Sbjct: 3 SKMIIENFEALKSWLSKTLEPMCCDADPSALAKYVLALVKKDKSEKELKALCIDQLDVFL 62
Query: 331 QQETKPFVEMLFGSLEKQEYL 393
Q+ET+ FVE LF ++ + YL
Sbjct: 63 QKETQIFVEKLFDAVNTKSYL 83
>AL139006-1|CAI95136.1| 1008|Homo sapiens RNA binding motif protein
26 protein.
Length = 1008
Score = 101 bits (243), Expect = 2e-21
Identities = 50/81 (61%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Frame = +1
Query: 154 SDMLIENPDAFKSWLTSILEPLC-DADPAALAKYVYALVKKDKPVDELREVMMDQLDVFL 330
S M+IEN +A KSWL+ LEP+C DADP+ALAKYV ALVKKDK EL+ + +DQLDVFL
Sbjct: 3 SKMIIENFEALKSWLSKTLEPMCCDADPSALAKYVLALVKKDKSEKELKALCIDQLDVFL 62
Query: 331 QQETKPFVEMLFGSLEKQEYL 393
Q+ET+ FVE LF ++ + YL
Sbjct: 63 QKETQIFVEKLFDAVNTKSYL 83
>AB005297-1|BAA23647.1| 1584|Homo sapiens BAI 1 protein.
Length = 1584
Score = 33.5 bits (73), Expect = 0.70
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 237 SPRQVCLRSCQEG-QTRGRAP*GDDGSTRCVSPAGNQTIC*NAVWFP 374
SP VC +C EG QTR R ST+C P Q +C N+ P
Sbjct: 361 SPWSVCSSTCGEGWQTRTRFCVSSSYSTQCSGPLREQRLCNNSAVCP 407
>Y15758-1|CAC17466.1| 683|Homo sapiens LB1 protein.
Length = 683
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 148 SFSDMLIENPDA---FKSWLT-SILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQ 315
+ +D++ PDA K W+ +++EP+ +A Y A++ +P++E+R ++D
Sbjct: 446 TLNDLIKNIPDAKKLVKYWICLALIEPITSPIENIIAIYEKAILAGAQPIEEMRHTIVDI 505
Query: 316 LDVFLQQETKPFVEMLFGSLEKQE 387
L + Q++ M K+E
Sbjct: 506 LTMKSQEKANLGENMEKSCASKEE 529
>EF560732-1|ABQ59042.1| 683|Homo sapiens CKAP2 protein protein.
Length = 683
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 148 SFSDMLIENPDA---FKSWLT-SILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQ 315
+ +D++ PDA K W+ +++EP+ +A Y A++ +P++E+R ++D
Sbjct: 446 TLNDLIKNIPDAKKLVKYWICLALIEPITSPIENIIAIYEKAILAGAQPIEEMRHTIVDI 505
Query: 316 LDVFLQQETKPFVEMLFGSLEKQE 387
L + Q++ M K+E
Sbjct: 506 LTMKSQEKANLGENMEKSCASKEE 529
>BC130296-1|AAI30297.1| 682|Homo sapiens cytoskeleton associated
protein 2 protein.
Length = 682
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 148 SFSDMLIENPDA---FKSWLT-SILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQ 315
+ +D++ PDA K W+ +++EP+ +A Y A++ +P++E+R ++D
Sbjct: 445 TLNDLIKNIPDAKKLVKYWICLALIEPITSPIENIIAIYEKAILAGAQPIEEMRHTIVDI 504
Query: 316 LDVFLQQETKPFVEMLFGSLEKQE 387
L + Q++ M K+E
Sbjct: 505 LTMKSQEKANLGENMEKSCASKEE 528
>AY062261-1|AAL47212.1| 682|Homo sapiens tumor-associated
microtubule-associated protein protein.
Length = 682
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 148 SFSDMLIENPDA---FKSWLT-SILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQ 315
+ +D++ PDA K W+ +++EP+ +A Y A++ +P++E+R ++D
Sbjct: 445 TLNDLIKNIPDAKKLVKYWICLALIEPITSPIENIIAIYEKAILAGAQPIEEMRHTIVDI 504
Query: 316 LDVFLQQETKPFVEMLFGSLEKQE 387
L + Q++ M K+E
Sbjct: 505 LTMKSQEKANLGENMEKSCASKEE 528
>AL359513-5|CAH71660.2| 682|Homo sapiens cytoskeleton associated
protein 2 protein.
Length = 682
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 148 SFSDMLIENPDA---FKSWLT-SILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQ 315
+ +D++ PDA K W+ +++EP+ +A Y A++ +P++E+R ++D
Sbjct: 445 TLNDLIKNIPDAKKLVKYWICLALIEPITSPIENIIAIYEKAILAGAQPIEEMRHTIVDI 504
Query: 316 LDVFLQQETKPFVEMLFGSLEKQE 387
L + Q++ M K+E
Sbjct: 505 LTMKSQEKANLGENMEKSCASKEE 528
>AK022982-1|BAB14345.1| 682|Homo sapiens protein ( Homo sapiens
cDNA FLJ12920 fis, clone NT2RP2004594. ).
Length = 682
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 148 SFSDMLIENPDA---FKSWLT-SILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQ 315
+ +D++ PDA K W+ +++EP+ +A Y A++ +P++E+R ++D
Sbjct: 445 TLNDLIKNIPDAKKLVKYWICLALIEPITSPIENIIAIYEKAILAGAQPIEEMRHTIVDI 504
Query: 316 LDVFLQQETKPFVEMLFGSLEKQE 387
L + Q++ M K+E
Sbjct: 505 LTMKSQEKANLGENMEKSCASKEE 528
>AK001611-1|BAA91788.1| 349|Homo sapiens protein ( Homo sapiens
cDNA FLJ10749 fis, clone NT2RP3001915. ).
Length = 349
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 148 SFSDMLIENPDA---FKSWLT-SILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQ 315
+ +D++ PDA K W+ +++EP+ +A Y A++ +P++E+R ++D
Sbjct: 112 TLNDLIKNIPDAKKLVKYWICLALIEPITSPIENIIAIYEKAILAGAQPIEEMRHTIVDI 171
Query: 316 LDVFLQQETKPFVEMLFGSLEKQE 387
L + Q++ M K+E
Sbjct: 172 LTMKSQEKANLGENMEKSCASKEE 195
>AJ429398-1|CAD22295.1| 683|Homo sapiens cytoskeleton associated
protein 2 protein.
Length = 683
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 148 SFSDMLIENPDA---FKSWLT-SILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQ 315
+ +D++ PDA K W+ +++EP+ +A Y A++ +P++E+R ++D
Sbjct: 446 TLNDLIKNIPDAKKLVKYWICLALIEPITSPIENIIAIYEKAILAGAQPIEEMRHTIVDI 505
Query: 316 LDVFLQQETKPFVEMLFGSLEKQE 387
L + Q++ M K+E
Sbjct: 506 LTMKSQEKANLGENMEKSCASKEE 529
>AF177227-1|AAG33675.1| 572|Homo sapiens CTCL tumor antigen se20-10
protein.
Length = 572
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 148 SFSDMLIENPDA---FKSWLT-SILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQ 315
+ +D++ PDA K W+ +++EP+ +A Y A++ +P++E+R ++D
Sbjct: 409 TLNDLIKNIPDAKKLVKYWICLALIEPITSPIENIIAIYEKAILAGAQPIEEMRHTIVDI 468
Query: 316 LDVFLQQETKPFVEMLFGSLEKQE 387
L + Q++ M K+E
Sbjct: 469 LTMKSQEKANLGENMEKSCASKEE 492
>BC018642-1|AAH18642.1| 524|Homo sapiens cell division cycle 25
homolog A (S. pombe) protein.
Length = 524
Score = 30.7 bits (66), Expect = 4.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 478 GPAPPLRHRVVVPRAAPPTEQTLVKAL 558
GP PP R R++ + PP Q +VKAL
Sbjct: 4 GPEPPHRRRLLFACSPPPASQPVVKAL 30
>BC015325-1|AAH15325.1| 222|Homo sapiens ZH2C2 protein protein.
Length = 222
Score = 30.7 bits (66), Expect = 4.9
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +1
Query: 178 DAFKSWLTSILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQLDVFLQQE 339
D F W+ ++ PLCD + ++K + + P ++++MDQ D F+QQ+
Sbjct: 166 DLFTKWI--VILPLCDVSASEVSKAIINIFFLYGPP---QKIIMDQRDEFIQQK 214
>BC007401-1|AAH07401.1| 524|Homo sapiens cell division cycle 25
homolog A (S. pombe) protein.
Length = 524
Score = 30.7 bits (66), Expect = 4.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 478 GPAPPLRHRVVVPRAAPPTEQTLVKAL 558
GP PP R R++ + PP Q +VKAL
Sbjct: 4 GPEPPHRRRLLFACSPPPASQPVVKAL 30
>AY137580-1|AAN11305.1| 484|Homo sapiens cell division cycle
protein 25A splice variant 2 protein.
Length = 484
Score = 30.7 bits (66), Expect = 4.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 478 GPAPPLRHRVVVPRAAPPTEQTLVKAL 558
GP PP R R++ + PP Q +VKAL
Sbjct: 4 GPEPPHRRRLLFACSPPPASQPVVKAL 30
>AF527417-1|AAM77917.1| 524|Homo sapiens cell division cycle 25A
protein.
Length = 524
Score = 30.7 bits (66), Expect = 4.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 478 GPAPPLRHRVVVPRAAPPTEQTLVKAL 558
GP PP R R++ + PP Q +VKAL
Sbjct: 4 GPEPPHRRRLLFACSPPPASQPVVKAL 30
>BC142977-1|AAI42978.1| 259|Homo sapiens hypothetical protein
LOC84792 protein.
Length = 259
Score = 30.3 bits (65), Expect = 6.5
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +1
Query: 124 NKSIVDFFSFSDMLIENPDAFKSWLTSILEPLCDADPAALAKYVYALVKKDKPVDELREV 303
++ + + SF D + P AF L S LEP C + +VY V +E + +
Sbjct: 158 HQKVPEMGSFQD---DPPSAFPKGLGSELEPACLHSILSATLHVYPEVLLS---EETKRI 211
Query: 304 MMDQLDVFLQQETKPFVEML 363
+D+L ++T F +ML
Sbjct: 212 FLDRLKPMFSKQTIEFKKML 231
>AK000132-1|BAA90963.1| 392|Homo sapiens protein ( Homo sapiens
cDNA FLJ20125 fis, clone COL06152. ).
Length = 392
Score = 30.3 bits (65), Expect = 6.5
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 178 DAFKSWLTSILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQLDVFLQQ 336
D F W+ ++ PLCD + ++K + + P ++++MDQ D F+QQ
Sbjct: 166 DLFTKWI--VILPLCDVSASEVSKAIINIFFLYGPP---QKIIMDQRDEFIQQ 213
>AF533707-1|AAQ09020.1| 259|Homo sapiens unknown protein protein.
Length = 259
Score = 30.3 bits (65), Expect = 6.5
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +1
Query: 124 NKSIVDFFSFSDMLIENPDAFKSWLTSILEPLCDADPAALAKYVYALVKKDKPVDELREV 303
++ + + SF D + P AF L S LEP C + +VY V +E + +
Sbjct: 158 HQKVPEMGSFQD---DPPSAFPKGLGSELEPACLHSILSATLHVYPEVLLS---EETKRI 211
Query: 304 MMDQLDVFLQQETKPFVEML 363
+D+L ++T F +ML
Sbjct: 212 FLDRLKPMFSKQTIEFKKML 231
>U88902-2|AAC79121.1| 467|Homo sapiens putative envelope protein
protein.
Length = 467
Score = 29.9 bits (64), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 308 WINSMCFSSRKPNHLLKCCLVPLRNKSI*NIVGSQRSLLLHYQNLRKNPSWRTMLP 475
W++S C SS P C L+P + ++ R L+H++N R PS T LP
Sbjct: 241 WLSSPC-SSDSPPRPSSCLLIPSPENNSERLLVDTRRFLIHHEN-RTFPS--TQLP 292
>AY050298-1|AAL11492.1| 402|Homo sapiens envelope protein protein.
Length = 402
Score = 29.9 bits (64), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 308 WINSMCFSSRKPNHLLKCCLVPLRNKSI*NIVGSQRSLLLHYQNLRKNPSWRTMLP 475
W++S C SS P C L+P + ++ R L+H++N R PS T LP
Sbjct: 241 WLSSPC-SSDSPPRPSSCLLIPSPENNSERLLVDTRRFLIHHEN-RTFPS--TQLP 292
>AY050297-1|AAL11491.1| 402|Homo sapiens envelope protein protein.
Length = 402
Score = 29.9 bits (64), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 308 WINSMCFSSRKPNHLLKCCLVPLRNKSI*NIVGSQRSLLLHYQNLRKNPSWRTMLP 475
W++S C SS P C L+P + ++ R L+H++N R PS T LP
Sbjct: 241 WLSSPC-SSDSPPRPSSCLLIPSPENNSERLLVDTRRFLIHHEN-RTFPS--TQLP 292
>AF108843-2|AAD34324.1| 584|Homo sapiens env protein protein.
Length = 584
Score = 29.9 bits (64), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 308 WINSMCFSSRKPNHLLKCCLVPLRNKSI*NIVGSQRSLLLHYQNLRKNPSWRTMLP 475
W++S C SS P C L+P + ++ R L+H++N R PS T LP
Sbjct: 241 WLSSPC-SSDSPPRPSSCLLIPSPENNSERLLVDTRRFLIHHEN-RTFPS--TQLP 292
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,371,372
Number of Sequences: 237096
Number of extensions: 1837889
Number of successful extensions: 4244
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 4069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4241
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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