Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8p15
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 80 1e-15
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical ... 29 3.0
Z99942-8|CAC70091.2| 439|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z99942-2|CAB17072.1| 468|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical pr... 28 6.9
X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein. 28 6.9
X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein. 28 6.9
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr... 27 9.1
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 80.2 bits (189), Expect = 1e-15
Identities = 42/82 (51%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +1
Query: 160 MLIENPDAFKSWLTSILEPLCDADPAALAKYVYALVKK-DKPVDELREVMMDQLDVFLQQ 336
M I+N DA WL+ L P+ DADP ALAKYV ALVKK DK DEL+ +QL+VFL
Sbjct: 1 MHIDNEDALFDWLSDELSPITDADPNALAKYVLALVKKPDKGHDELKAFTNEQLNVFLTD 60
Query: 337 ETKPFVEMLFGSLEKQEYLKHS 402
T PFV+ +F +L + Y+ S
Sbjct: 61 HTAPFVDKVFEALTSKSYMPAS 82
>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical
protein F23D12.2 protein.
Length = 1322
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -2
Query: 587 YTGSSSSSVGRAFTS---VCSVGGAALGTTTRCRSGGAGPLVAW 465
Y G+ SS V + S + A + TT C SGGA L AW
Sbjct: 26 YCGTWSSLVSEDYLSKIETSAFSSATVATTILCTSGGAPTLPAW 69
>AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical
protein Y52B11A.5 protein.
Length = 219
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 406 PDYVSDTLVSQ-GNQTAFQQMVWFPAGETHRVDPSSPHGA 290
PD ++D G Q+ Q V FP+G TH P PHGA
Sbjct: 156 PDGITDGYNGPWGVQSCVHQFV-FPSGSTHPRWPGIPHGA 194
>Z99942-8|CAC70091.2| 439|Caenorhabditis elegans Hypothetical
protein H13N06.3b protein.
Length = 439
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +1
Query: 151 FSDMLIENPDAFKSWLTSILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQLDVFL 330
F D D + ++L+ LCD P L+K+V ++ +K V E + +MD +D
Sbjct: 95 FLDAFAVESDKENNSFANVLK-LCDL-PGLLSKFVDDEIRFEKEVAECKAFLMDLIDTST 152
Query: 331 QQETKP 348
KP
Sbjct: 153 TGGIKP 158
>Z99942-2|CAB17072.1| 468|Caenorhabditis elegans Hypothetical
protein H13N06.3a protein.
Length = 468
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +1
Query: 151 FSDMLIENPDAFKSWLTSILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQLDVFL 330
F D D + ++L+ LCD P L+K+V ++ +K V E + +MD +D
Sbjct: 124 FLDAFAVESDKENNSFANVLK-LCDL-PGLLSKFVDDEIRFEKEVAECKAFLMDLIDTST 181
Query: 331 QQETKP 348
KP
Sbjct: 182 TGGIKP 187
>Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical
protein F17E5.1b protein.
Length = 620
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 106 FEWIITNKSIVDFFSFSDMLIENPDAFKSWL 198
F++IITN I D + + L+E A+ WL
Sbjct: 584 FDFIITNSDIDDTIAQLERLVEKLPAYPQWL 614
>Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical protein
F17E5.1a protein.
Length = 961
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 106 FEWIITNKSIVDFFSFSDMLIENPDAFKSWL 198
F++IITN I D + + L+E A+ WL
Sbjct: 925 FDFIITNSDIDDTIAQLERLVEKLPAYPQWL 955
>X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein.
Length = 620
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 106 FEWIITNKSIVDFFSFSDMLIENPDAFKSWL 198
F++IITN I D + + L+E A+ WL
Sbjct: 584 FDFIITNSDIDDTIAQLERLVEKLPAYPQWL 614
>X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein.
Length = 961
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 106 FEWIITNKSIVDFFSFSDMLIENPDAFKSWL 198
F++IITN I D + + L+E A+ WL
Sbjct: 925 FDFIITNSDIDDTIAQLERLVEKLPAYPQWL 955
>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
F36H2.3 protein.
Length = 1388
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 578 SSSSSVGRAFTSVCSVGGAALGTTTRCRSGGAGPLV 471
++S + G T C+ GG+ LGT+T C +G P +
Sbjct: 1075 TTSFTSGTVATVTCTTGGSMLGTST-CTNGLWSPAI 1109
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,738,886
Number of Sequences: 27780
Number of extensions: 278549
Number of successful extensions: 784
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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