Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8p13
         (724 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.5  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   3.3  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   4.4  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   5.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +3

Query: 498 SPYGMSASTAALPATCSATTHSLTPTSISSSLRSCPRPVTATALRPRCSDT 650
           +PY     T +  +T    T  ++PT    SL S P P    + +P  S +
Sbjct: 295 TPYSAPGPTYSTWSTVQTPTTVMSPTINCWSLTSSPPPPYQISAQPTPSQS 345


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 272 MKSESSYTSSEEGCGAGERHAVLSYEQVRR 361
           +KSESS  +   GC +GE   VL+   +RR
Sbjct: 97  VKSESSQAAKYGGCFSGE-STVLTSTGLRR 125


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 60  TESRVTRTKNTFKFISKPT 116
           T S  TRT  T KF +KP+
Sbjct: 164 TTSTTTRTTLTTKFTTKPS 182


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 272 MKSESSYTSSEEGCGAGERHAVLSYEQVRRLNDVMDEVVAIHG 400
           +KS+S           G RH + +  Q+   ++V++E+  +HG
Sbjct: 165 LKSDSLAVRLSAANFFGARHGLETLNQLIWFDEVVNELRILHG 207


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 206 MGVIKLSPDTASLISACDLLDDMKSESSYTSSEE 307
           +G +  SP   SL     L+DD   +   TSS E
Sbjct: 795 IGCVLCSPGCFSLFRGKALMDDNVMKKYTTSSSE 828


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 206 MGVIKLSPDTASLISACDLLDDMKSESSYTSSEE 307
           +G +  SP   SL     L+DD   +   TSS E
Sbjct: 795 IGCVLCSPGCFSLFRGKALMDDNVMKKYTTSSSE 828


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 206 MGVIKLSPDTASLISACDLLDDMKSESSYTSSEE 307
           +G +  SP   SL     L+DD   +   TSS E
Sbjct: 795 IGCVLCSPGCFSLFRGKALMDDNVMKKYTTSSSE 828


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 206 MGVIKLSPDTASLISACDLLDDMKSESSYTSSEE 307
           +G +  SP   SL     L+DD   +   TSS E
Sbjct: 795 IGCVLCSPGCFSLFRGKALMDDNVMKKYTTSSSE 828


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,410
Number of Sequences: 336
Number of extensions: 2857
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)