Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8p13
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.1  
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    27   2.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.3  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   6.3  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    26   6.3  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    26   6.3  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   8.3  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   8.3  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   8.3  

>SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 125

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +2

Query: 164 CTCSASRPDHKSVNMGVIKLSPDTASLISACDLLDDMKSESSYTSSEEGCGAGERHAV 337
           CTC   R    S       L  +T   IS+CDL DD+ S   +  +   C   E   +
Sbjct: 26  CTCFPKRKKEASERSCFPFLDTET---ISSCDLSDDVLSPKLFAKNSYRCSLKETKCI 80


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 214 DAHVDALMIWS*SRTGANARRTERVLR 134
           DA +D+L++   ++TGA A + ERV R
Sbjct: 257 DAEIDSLIVSEETKTGATAVQEERVKR 283


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 513 SASTAALPATCSATTHSLTPTSISSSLRSCPRPVTATA 626
           S+S  ++ +T S+T  S  PTS SSS  S    V++++
Sbjct: 183 SSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSS 220



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +3

Query: 513 SASTAALPATCSATTHSLTPTSISSSLRSCPRPVTA 620
           S+S+++ PA+ S+ + SL+    SSS +S   PV++
Sbjct: 386 SSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSS 421


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 39/184 (21%), Positives = 82/184 (44%), Gaps = 4/184 (2%)
 Frame = +3

Query: 84  KNTFKFISKPTCFSDVARKTLSVLRAFAPVRLHDQIIRASTWA----SSN*VRTPRPSYL 251
           + TF ++    C++++   + ++  AF  +R ++Q    ST      SS+   TP P Y 
Sbjct: 47  QGTFTYLDPAYCYNNICGGSDNI--AFVAIR-NNQCYCGSTLTATEVSSSLCTTPCPGYG 103

Query: 252 PATCSMT*RANRAIHRQKKGAVRESVTPCSATSKCGGSMTSWTRWWPSTVAATSLRCTCA 431
              C        +++    G ++ +V+  S +S    S +S     PS+ + T+     +
Sbjct: 104 SLMCGGD--LYWSVYLTGNGVLQTTVSSSSVSSTTSSSSSSS----PSSSSTTTTTSPSS 157

Query: 432 YASL*LGCEPAWSWRRRLAGPGSPYGMSASTAALPATCSATTHSLTPTSISSSLRSCPRP 611
            +S         S     +   S    S+S+++  ++ S+++ S + +S SSS  S   P
Sbjct: 158 SSSS--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVP 209

Query: 612 VTAT 623
           +T++
Sbjct: 210 ITSS 213


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -1

Query: 631 LNAVAVTGRGQLRSEDEIDVGVRLWVVAEHVAGSAAVEADIPYGDPGPASRLRQLQA 461
           L AV+ T R  L +  ++D     WV+ E + G+A +   +     G  SRL+++ A
Sbjct: 500 LRAVSQTLRPLLDNYSDLDT----WVIKEQLPGAALLSTSVSAEIVGFQSRLKEIIA 552


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = +3

Query: 501 PYGMSASTAA-LPATCSATTHSLTPTSISSSLRSCPRPVTATALRPRCSDTWPPCCL--- 668
           P G + S      +  SA+  +   T+ SS  +      T   L+P  +  WPP  +   
Sbjct: 516 PEGFNVSNVTEYSSAYSASLSNYYATATSSVFQIVSPTATPLGLKPDYNIDWPPYAINNE 575

Query: 669 QRRLDVAQHLL 701
           Q   D+A H++
Sbjct: 576 QGNHDIANHIV 586


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = +3

Query: 474 RRRLAGPGSPYGMSASTAALPATCSATTHSLTPTSISSSLRSCPRPVTATALRPRCSDTW 653
           RRRL+   +   MSA T+ L  T    + SL+ TSI S+ +  P      A     S   
Sbjct: 447 RRRLSAAATATPMSAPTSVLTGTSPQPSPSLS-TSIMSTPKLNPSESVVVASEKASSPDL 505

Query: 654 PP 659
            P
Sbjct: 506 SP 507


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 510 MSASTAALPATCSATTHSLTP--TSISSSLRSCPRPVTATALRPRCSD 647
           +S+S  A   +  A THS+TP  TS +SSL        +++L   CS+
Sbjct: 566 ISSSLTATSTSTPALTHSITPSNTSYTSSLIPSSSTDYSSSLITVCSN 613


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 480 RLAGPGSPYGMSASTAALPATCSATTHSLTPTSISSSLRSCPRPVT 617
           +   P  P+G   ST  LPA  S T+ ++  +S S  +   P P T
Sbjct: 280 KTTAPPPPHG---STTPLPAAASYTSMNMKQSSASHPVLQPPAPST 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,308
Number of Sequences: 5004
Number of extensions: 46710
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)