Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8p13
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8977| Best HMM Match : No HMM Matches (HMM E-Value=.)               96   3e-20
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)                30   1.7  
SB_55751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_14600| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_6953| Best HMM Match : Phage_integrase (HMM E-Value=0.33)           28   6.7  
SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)                      28   6.7  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_16920| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  
SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)                  28   8.8  
SB_15475| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   8.8  

>SB_8977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 49/104 (47%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
 Frame = +2

Query: 335 VLSYEQVRRLNDVMDEVVAIHGRGNFPTLHVRLRELVAGVRARLELAQAAGGAGVSVRDV 514
           VL+YEQV RL++V+++VV +HGRGNFPTL V LREL+  V + L+         + +RD+
Sbjct: 9   VLTYEQVHRLDNVLNQVVQVHGRGNFPTLDVHLRELINVVSSGLK------DENLRIRDI 62

Query: 515 RLNGGAASHVLG-DNPQPYSDIDLIFTAELPTARHCDRVKAAVL 643
           RLNG  AS++L  D+   Y+DIDLIF  E+ +  H  ++K+ VL
Sbjct: 63  RLNGSTASYILSRDSNTAYNDIDLIFGVEIKSHTHLQQIKSVVL 106


>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 625 R*GRGARTLGHPAASSDASTSHNT--CWTKKRLT 720
           R GRG R  G   A SDAS S+NT  C  +KR T
Sbjct: 383 RGGRGGRGGGGRGAGSDASASYNTIVCAKRKRAT 416


>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
          Length = 1064

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
 Frame = +3

Query: 201 STWASSN*VRTPRPSYLPATCSMT*RANRAI----HRQKKG--AVRESVTPCSATSKCG 359
           ++W +S   RT RPS    + +   R  RA+      QKK   AVRE+ T CS  +K G
Sbjct: 818 ASWRNSEEARTDRPSQQLRSLNGEWRLMRALLGDTSEQKKARAAVRETSTKCSVINKVG 876


>SB_55751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 498 SPYGMSASTAALPATCSATTHSLTPTSISSSLRSCPRPVTATALRPRCSD 647
           +P   +  TA  PAT +ATT +  PT+ +  + +  R +T   +    +D
Sbjct: 31  TPMAPTTITATTPATIAATTITTFPTATNPPITAANRMITLLTIAATTAD 80


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +2

Query: 170 CSASRPDHKSVNMGVIKLSPDTASLISACDLLDDMKSESSYTSSEEGCGAGERHAVLS 343
           C++  P H  +N      S  T   +  C +  +    S YT   + CG G RH   S
Sbjct: 223 CTSPPPQHGGLNC-TGAFSETTPCNLRPCPINGNYTQWSEYTPCSKTCGGGTRHRTRS 279


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 336 CSATSKCGGSMTSWTRWWP 392
           CS T  C G  + W+RW P
Sbjct: 27  CSVTPSCKGIFSEWSRWGP 45


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 183  DQIIRASTWASSN*VRTPRPSYLPATCSMT 272
            D+  RA T A+S+   TPRP+Y P T   T
Sbjct: 4646 DESERADTGAASSPSTTPRPTYSPTTHKTT 4675


>SB_14600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 143 PLGPPRVCTCSASRPDHKSVNMGVIKLSPD 232
           P+G  R  TC  S+    S N GV K+ PD
Sbjct: 224 PVGARRNLTCHNSKQAASSGNQGVAKIGPD 253


>SB_6953| Best HMM Match : Phage_integrase (HMM E-Value=0.33)
          Length = 721

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +3

Query: 504 YGMSASTAALPATCSATTHSLTP-TSISSSLRSCPRP---VTATALRPRCSDTWPPCCLQ 671
           YG+S   A  P T +     L    + ++ + + PRP   V A   RPR +   P  C Q
Sbjct: 626 YGISCKDATDPPTTTGRRKLLEQLANPNAPVAATPRPASDVVAAHPRPRTNGQIPIACPQ 685

Query: 672 RRLDVAQHLLD 704
           RR      LLD
Sbjct: 686 RRRKDPAVLLD 696


>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 755

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
 Frame = +3

Query: 306 KGAVRESVTPCSATSKCGGSMTSWTRWWPSTVAATSLRCTCAYASL*LGCEPAWSWRRRL 485
           K + R  +T  + TS    S  S  +    T  AT+   T A A+   G   A S +  +
Sbjct: 272 KTSTRAGLTKAATTSPNSSSSLSTGK--ARTTEATTTGTTAATATT--GTTEALSSQSVI 327

Query: 486 AGPGSPYGMSAST-AALPATCSATTHSLTPTSISSSLRSCPRPVTAT 623
           +   +    SA+T AA  AT    T   TP+S  +S  S     TAT
Sbjct: 328 SNASTTSTTSATTIAATGATTPTDTTQATPSSFVTSDASINTATTAT 374


>SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)
          Length = 406

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 486 AGPGSPYGMSA-STAALPATCSATTHSLTPTSIS-SSLRSCP 605
           A   +P  +SA S  +LP+T S    S TPT++S +SL S P
Sbjct: 180 ASSNTPTALSATSLMSLPSTSSLEASSNTPTALSATSLMSLP 221


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 456  EPAWSWRRRLAGPGSPYGMSASTAALP 536
            + AW + R  +G G P G+SA T+A+P
Sbjct: 1764 DSAWMYMR--SGQGDPQGLSAPTSAVP 1788


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 492 PGSPYGMSASTAALPATCSATTHSLTPTSISSSLRSCPRPVT 617
           P +P   + S  + PA C+A+    TP +ISS     P P T
Sbjct: 322 PNTPTTRTFSPISPPAGCAASPVPPTPPAISSKRSFSPSPST 363


>SB_16920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = +2

Query: 224 SPDTASLISACDLLDDM-KSESSYTSSEEGCGAGERHAVLSYEQVRRLN--DVMDEVVAI 394
           S  + + I++C LL D  K +S+   S  GC   +  A   Y ++R     D +   V +
Sbjct: 188 SKRSEAYITSCLLLTDREKDQSNEKPSSNGCIEFQEWA--QYWRLRSHGGIDGLHVGVRL 245

Query: 395 HGRGNFPTLHVRLRELVAGVRARLELAQAAGGAGVSVR 508
           HGR +     VR+   V  VR   +    A G G+ ++
Sbjct: 246 HGRVSMVAAVVRVTCYVVRVRVAEQSTGRAHGGGICLK 283


>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2578

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 336  CSATSKCGGSMTSWTRWWPSTVAATSL 416
            CS+ S+  GS+  WTR  P  V+  SL
Sbjct: 2534 CSSASESSGSLDHWTRRIPPRVSRESL 2560


>SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)
          Length = 554

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/15 (73%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
 Frame = +3

Query: 630 RP-RCSDTWPPCCLQ 671
           RP RCS  W PCCLQ
Sbjct: 355 RPLRCSSCWFPCCLQ 369


>SB_15475| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 417

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 479 AAGGAGVSVRDVRLNGGAASHVLGDNPQPYSDIDLI 586
           A+ G+G S R+ RL+  AA    G + +PY  IDL+
Sbjct: 46  ASSGSG-SAREARLHNSAAWCSDGGDSEPYLQIDLL 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,600,951
Number of Sequences: 59808
Number of extensions: 425423
Number of successful extensions: 1501
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)