Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8p11
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    39   4e-05
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 38.7 bits (86), Expect = 4e-05
 Identities = 23/95 (24%), Positives = 49/95 (51%)
 Frame = +3

Query: 144 VGKTALITGCNTGIGKETALDFYKRGARVIMACRSLERAEEAKADIEKSCNNINETGHLI 323
           + + AL+TG N+GIGK        +G +VI     +++ +    +++      ++ G L+
Sbjct: 6   IDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELK------SKPGKLV 59

Query: 324 IAKCDLTSLKSVREFAQNILDTEPQINILVNNAGV 428
             +CDL++   + +  + +      I+IL+NNA +
Sbjct: 60  PLQCDLSNQNDILKVIEWVEKNLGAIDILINNATI 94


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 418 LLTRILICGSVSK 380
           L+ R+LICGS+S+
Sbjct: 421 LIMRVLICGSISE 433


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 105 PLFSGRCISTVKLVGKTALI 164
           P FSG    T  LVGKT  +
Sbjct: 926 PAFSGTSSPTNSLVGKTVAV 945



 Score = 21.8 bits (44), Expect = 4.4
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 150  KTALITGCNTGIGKETALDFYKRGARVIMACRSLERAEEAKADIEKSCNNI 302
            K A   GC++  G+ T+  F +  A    +   LERA  A +      N++
Sbjct: 888  KPASTPGCSSKNGEPTSAAFAQGFATAASSPGLLERASPAFSGTSSPTNSL 938


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 458 WFRNTVCY 481
           WF+NT CY
Sbjct: 533 WFQNTFCY 540


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,392
Number of Sequences: 438
Number of extensions: 2566
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)