Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8p09
         (359 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4156| Best HMM Match : Ets (HMM E-Value=0)                          27   4.6  
SB_29301| Best HMM Match : MFS_1 (HMM E-Value=2.9e-05)                 26   8.0  
SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)                      26   8.0  

>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
          Length = 516

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 85  LNDDITSEPQQFSEPVYKMPIDDMMVGY 168
           LN  ITS+ Q  ++  YK P  D   G+
Sbjct: 444 LNQPITSDAQAHAQAAYKFPGSDFYAGF 471


>SB_29301| Best HMM Match : MFS_1 (HMM E-Value=2.9e-05)
          Length = 662

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 355 FFVVNRVY*KQKENQCQYY 299
           FFV+NRVY ++ +N+ Q Y
Sbjct: 590 FFVLNRVYYRRMDNRYQQY 608


>SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)
          Length = 622

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 133 YKMP-IDDMMVGYNNTTSNVSAGIIIL 210
           YK+P IDD+ +G N TTS +   I ++
Sbjct: 35  YKLPLIDDVGIGANPTTSLIQQNITLI 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,822,159
Number of Sequences: 59808
Number of extensions: 135495
Number of successful extensions: 336
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)