Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8p06
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    27   3.9  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    26   5.1  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    26   5.1  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   5.1  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   6.8  
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    26   6.8  

>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 32  KRASWLKYL-EQSKLSAPESLVWCWHSEVRW 121
           K++ WL+ L + SKLS  E+LV   HS V W
Sbjct: 126 KKSGWLQGLRDPSKLSKKETLV-AHHSSVLW 155


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 205 FKECGVINVKISNGSP 252
           FK+CGVI   I NG+P
Sbjct: 130 FKKCGVIAKNIDNGTP 145


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 92  LSSQEQITSTVPDILANSLSSYVFN 18
           L+   + T+T PDIL +SL  Y++N
Sbjct: 542 LTITPRATTTTPDILIHSLCVYLYN 566


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -2

Query: 252 RATIGNLDIDHSALLKVPFTDFHAEFSVSLKQLWLEYRYKKD 127
           R  +GN + + + L   PFT  ++ + +++   + EY   KD
Sbjct: 444 RRLVGNTNFEEAYLSLNPFTKTYSSYRITIFNYFREYPGSKD 485


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 41  SWLKYLEQSKLSAPESLVWCWHSEVRW 121
           +W+K+  + K  +PE+L W    +V W
Sbjct: 338 TWMKHKFKLKTISPETLNWLKECDVTW 364


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 137 YRYSNQSCFSETENSAWKSVNG 202
           Y Y+++   ++TEN+  KS+NG
Sbjct: 93  YLYNSEDLSNDTENNETKSING 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,423
Number of Sequences: 5004
Number of extensions: 60970
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)