Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8p06
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616...    31   0.76 
04_03_0075 + 10726807-10727721,10728756-10729496                       31   1.3  
03_01_0451 + 3461229-3461561,3462043-3462290,3462425-3462716,346...    31   1.3  
11_03_0025 + 9047646-9047958,9048150-9048474,9049833-9051828,905...    30   2.3  
02_03_0007 - 13875735-13875826,13876217-13877465                       28   7.1  

>04_04_0457 +
           25359486-25359571,25360690-25360782,25361561-25361622,
           25361758-25361816,25363624-25363733,25364795-25364829,
           25365469-25365546,25365952-25366005,25366277-25366362,
           25366468-25366571,25366986-25367054,25367135-25367250,
           25367387-25367421,25367512-25367654,25367808-25367930,
           25368463-25368556
          Length = 448

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
 Frame = +2

Query: 119 WAASFLYRYSNQSCFSETE-NSAWKSVNGTLRS-AE*SMSRFPMVARSASSLLVIPE-CE 289
           ++ SF    ++++   E +  S W+S NGT+R+    ++ R P++ ++   +L +P+  E
Sbjct: 139 YSNSFFMTLTDETRVKEFKLKSMWRSPNGTIRNILNGTVFREPILCKNVPRILSVPDGAE 198

Query: 290 GTHLNVIN 313
              LNV N
Sbjct: 199 PVELNVYN 206


>04_03_0075 + 10726807-10727721,10728756-10729496
          Length = 551

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = -3

Query: 287 HIPELRAMKKLTGLPLEILTLITPH--SLKFHLQISMLNSPFH*SNFGWNTGIKKTPPTE 114
           H+ E+     L GLP+E L + TP   SLK  L  +  + PF  + F     + +    E
Sbjct: 204 HVFEIHDFDILIGLPIEQLLINTPRLDSLKVTLGENKFSVPFSRAMFALTDSLPEDEYAE 263

Query: 113 PRYANTTLSSQEQ-ITSTVPDIL 48
              A T   S E  + + VPD +
Sbjct: 264 EVTAVTAHESPETLLENEVPDFI 286


>03_01_0451 +
           3461229-3461561,3462043-3462290,3462425-3462716,
           3463057-3463209,3463288-3463674
          Length = 470

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 300 KWVPSHSGITSNEEADRATIGNLDIDHSALLKVP 199
           +W P+  G    +E D AT+GNL +D   +L VP
Sbjct: 56  RWPPAEGGGEEGKETDLATLGNLCVD--VVLSVP 87


>11_03_0025 +
           9047646-9047958,9048150-9048474,9049833-9051828,
           9051991-9052190,9052851-9052899
          Length = 960

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -3

Query: 383 LVNFTYTILCMTLKNQSRLFVKKY**HSNGY-LHIPEL--RAMKKLTGLPLEILTL 225
           L  + YTI  +  ++ S+LFVKK      G   H+ E+    +KK  GLPL IL +
Sbjct: 260 LQEYVYTIKPLNHQDSSKLFVKKIFPSGCGVPQHLKEVSNAILKKCGGLPLAILII 315


>02_03_0007 - 13875735-13875826,13876217-13877465
          Length = 446

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 287 HIPELRAMKKLTGLPLEILTLITPH--SLKFHLQISMLNSPF 168
           HI E++    L GLP+E+L + TP   SLK  L  +  + PF
Sbjct: 203 HIFEIQDFDILIGLPIELLLINTPRLDSLKITLGGNEFSVPF 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,374,164
Number of Sequences: 37544
Number of extensions: 329398
Number of successful extensions: 715
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)