Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8p04
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05)            38   0.007
SB_13898| Best HMM Match : DUF987 (HMM E-Value=3.4)                    30   1.8  
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_6443| Best HMM Match : TSP_C (HMM E-Value=0)                        28   7.1  
SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_21172| Best HMM Match : LIM (HMM E-Value=1.3)                       28   9.4  

>SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05)
          Length = 656

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
 Frame = -3

Query: 658 RPHNIDGRQVDCGR---RHLQQRSHGVQQRVRLNLRHLRSARVVVKRGFEQFEQRMILFR 488
           +PH +    V+ G+   R     S    +R   +LR+ RS   V K G +  E  M+  +
Sbjct: 129 QPHVVVRHPVNAGKVYKRSCHVTSESRSRRGIRDLRNRRSVNNVTKPGRKTLEVAMVADQ 188

Query: 487 SQQKYHGHDHVADFVFCRTGAVQRIVMD*FASSISVSAHVDQLFGRLRRRDGVG 326
              K HG   +ADF+      V R+  D  A    +   V +L   + ++ GVG
Sbjct: 189 YVIKTHGEGKIADFMLMLAHVVNRMFQDESAGDTRIQLVVTKLV--ISKQGGVG 240


>SB_13898| Best HMM Match : DUF987 (HMM E-Value=3.4)
          Length = 421

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 700 RVFHNRTVETTCKRRPHNID-GRQVDCGRRHLQQRSHG 590
           RV+   T+++T   RPH +D        R + QQR HG
Sbjct: 347 RVYQQETIDSTVNTRPHGMDKSLPARDNRLYRQQRPHG 384


>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4232

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
 Frame = +2

Query: 314  LFARANAVAPAQPSEELINMRRYRNAARKLIHHYSLNSTSSTEYKISDVVMTMIFLLRSE 493
            +  + + V   + + ++IN+ R+  A  K   + ++N+T+ST   +  VV       +S 
Sbjct: 2207 IITQPSLVESGESTLKIINVNRHDEAYYKCRANNTVNTTASTNTSV--VVQYPPKFFQSP 2264

Query: 494  KYHSLFKLLETTFD-DYTCRPQ--MTQVQTDTLLDA--VRSLLEMP----STTVDLTTVD 646
            K  ++ +  + T      C+P+  +T ++ +T LD   VR  +  P    +TT  LT  +
Sbjct: 2265 KDKTVTEKSDVTLTCQLECKPKCSVTWLKDNTPLDTSPVRITVTHPGSFGNTTSSLTITN 2324

Query: 647  IMRSSFAR 670
            ++R+  AR
Sbjct: 2325 LVRTDEAR 2332


>SB_6443| Best HMM Match : TSP_C (HMM E-Value=0)
          Length = 521

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 331 VGSRKQIYYGTRRRMGGRWRCDDDARVSRRVLRRYG 224
           V  R + YYG    + GR R D    VS+R   +YG
Sbjct: 191 VSERDRFYYGVWNIVFGRLRVDGKGTVSKRDRYKYG 226


>SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 349 LRRRDGVG-SRKQIYYGTRRRMGGRWRC 269
           L+R D VG SR     G+R RM G WRC
Sbjct: 531 LKRSDFVGPSRSGKGMGSRGRMSGVWRC 558


>SB_21172| Best HMM Match : LIM (HMM E-Value=1.3)
          Length = 274

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 460 HVADFVFCRTGAVQR 416
           H+AD+V+CRTG   R
Sbjct: 51  HLADYVYCRTGVAHR 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,006,796
Number of Sequences: 59808
Number of extensions: 433881
Number of successful extensions: 1425
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)