Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8p02
(421 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0) 110 5e-25
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 2e-16
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 8e-04
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05) 39 0.001
SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09) 37 0.006
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76) 29 1.6
SB_57839| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_6446| Best HMM Match : DENN (HMM E-Value=2.2) 29 2.1
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_31904| Best HMM Match : Extensin_2 (HMM E-Value=0.5) 28 3.6
SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0) 28 3.6
SB_28427| Best HMM Match : fn3 (HMM E-Value=1.3e-07) 27 6.3
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29) 27 8.3
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41) 27 8.3
SB_27526| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-08) 27 8.3
>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
Length = 266
Score = 110 bits (264), Expect = 5e-25
Identities = 50/105 (47%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Frame = +1
Query: 82 VETISPGDESTYPKS-GQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEG 258
+E +S ++ T G T+ +HYTG L NG KFDSS DRGK F F +GK VI+GW++G
Sbjct: 29 IEVVSKPEKCTRKTHVGDTLSMHYTGRLANGNKFDSSLDRGKTFDFTLGKGMVIQGWEQG 88
Query: 259 VAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRLE 393
+ M +GE+ KLT P AYG+ G IPP++TL DVEL+ ++
Sbjct: 89 LLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHATLYMDVELVEIQ 133
>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 82.2 bits (194), Expect = 2e-16
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 7/106 (6%)
Frame = +1
Query: 85 ETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGK---PFKFRIGKSEVIRGWDE 255
ET P D K G VVVHYTG + +G FD++RD K PF+F IG VI+G+++
Sbjct: 104 ETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRDHRKGYQPFEFTIGGGTVIKGFEQ 163
Query: 256 GVAKMSVGERAKLTCSPDYAYGQQGH---PGVIP-PNSTLIFDVEL 381
GV M VG++ K+ P AYG++G PG + N+TL +++EL
Sbjct: 164 GVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLEL 209
>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 39.9 bits (89), Expect = 8e-04
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +1
Query: 73 GVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGK 228
GV +S G + G TVVV Y G NG++FDS+ G PF+F +G+
Sbjct: 873 GVRKRILSEGHGAEMANVGCTVVVRYVGKFLNGEEFDSNTG-GVPFEFVLGE 923
>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
Length = 639
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = +1
Query: 121 KSGQTVVVHYTGTLTN----GKKFDSSRDRGKPFKFRIGKSEVIRG 246
++G V V YTG L GK FDS+ K FKF+ GK +VI+G
Sbjct: 120 ETGDAVEVKYTGWLLENGNFGKVFDSNAGTDKTFKFKTGKGKVIKG 165
>SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)
Length = 372
Score = 37.1 bits (82), Expect = 0.006
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 130 QTVVVHYTGTL---TNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTC 300
Q V H+ L + ++ D SR G+PF+ +GK + W+E + M V E A+ TC
Sbjct: 93 QLAVFHFKTFLMEQSEKQELDCSRKIGQPFELLMGKKFKLEIWEELIKTMRVKEVARFTC 152
Query: 301 SPDYAYG 321
G
Sbjct: 153 DKSVVAG 159
>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
Length = 600
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 241 RGWDEGVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDV 375
R D +S GE CSP+ PG++PP+S + D+
Sbjct: 538 RQGDHLAGLVSAGEVRSPGCSPEDVLAVPASPGLVPPSSGALTDL 582
>SB_57839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 319 RKHSQESRLIWHAHLQTSLPHPH 251
RK+SQ + +IW+ H Q H H
Sbjct: 109 RKNSQRNNIIWYNHFQQEHKHQH 131
>SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)
Length = 492
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +1
Query: 283 RAKLTCSPDYA----YGQQGHPGVIPPNSTLIFDVELLRLE*IQF 405
R +CSP A + Q+G ++ PNST +F + L R + QF
Sbjct: 274 RRLFSCSPHVAAIFDFYQRGSLVILNPNSTAVFQIALYRKKIAQF 318
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 175 KFDSSRDRGKPFKFRIG----KSEVIRGWDEGVAKMSVGERAKLT 297
KFD + G PFK R+G E ++ + G++ G+ A+ T
Sbjct: 3054 KFDETHIPGSPFKIRVGGGGAHPEKVKAYGPGLSSGHAGKSAEFT 3098
>SB_31904| Best HMM Match : Extensin_2 (HMM E-Value=0.5)
Length = 398
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 272 DIFATPSSQPRITSDFPILNLKGLPRSRDESNFLP 168
D+ +T SQP+I S + G+PR R SN P
Sbjct: 214 DVSSTKRSQPKIGSSALLPKSFGVPRDRSPSNEKP 248
>SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)
Length = 922
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 109 STYPKSGQTVVVHYTGTLTNGKKFD 183
+ YPKSGQT + + NG +FD
Sbjct: 36 TAYPKSGQTWTIEIVKQVLNGGEFD 60
>SB_28427| Best HMM Match : fn3 (HMM E-Value=1.3e-07)
Length = 276
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 76 VTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSR 192
+T++ S D+ST P +G TV +GT T + SS+
Sbjct: 178 LTMQLTSLADDSTGPLTGYTVKYRTSGTWTTREILSSSQ 216
>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
Length = 1890
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 152 LEHSRTVKSLTHRVTVASPSSSGSENLK*SVAG 250
LE R +K L ++ V PSS N+K + +G
Sbjct: 1596 LERMRQIKRLRSKIDVNGPSSPSPHNVKPNASG 1628
>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
Length = 1682
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 181 DSSRDRGKPFKFRIGKSEVIRG 246
DS R R PFK +IG+ VI G
Sbjct: 165 DSLRSRKAPFKSKIGQPNVISG 186
>SB_27526| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-08)
Length = 326
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 280 ERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRLE 393
+R K Y G V+PP S L VEL R E
Sbjct: 257 KRVKFAKDASSRYAADGPAAVVPPQSGLPLSVELSRSE 294
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,547,961
Number of Sequences: 59808
Number of extensions: 270951
Number of successful extensions: 657
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -