Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8o23
         (273 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22150| Best HMM Match : Brevenin (HMM E-Value=2.2)                  28   1.3  
SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)                  27   1.8  
SB_15832| Best HMM Match : zf-C2H2 (HMM E-Value=7e-35)                 27   1.8  
SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_18989| Best HMM Match : TLP-20 (HMM E-Value=1.9)                    27   3.1  
SB_28016| Best HMM Match : F-box (HMM E-Value=0.15)                    26   4.1  
SB_4849| Best HMM Match : Pox_H7 (HMM E-Value=1.8)                     26   4.1  
SB_50109| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-10)           25   7.2  
SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  
SB_23331| Best HMM Match : FAINT (HMM E-Value=3.4)                     25   7.2  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         25   7.2  
SB_6066| Best HMM Match : F5_F8_type_C (HMM E-Value=2.3e-18)           25   7.2  
SB_45686| Best HMM Match : T-box (HMM E-Value=0)                       25   9.5  
SB_7272| Best HMM Match : TP2 (HMM E-Value=3.1)                        25   9.5  

>SB_22150| Best HMM Match : Brevenin (HMM E-Value=2.2)
          Length = 126

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 35  DYENGRPVDIEHAQLHVFSRQQSGGGHHYQFGRRSRWLFGTNRRRQ 172
           D E+    D++  QL     ++ G      FGRR R+ +   RRR+
Sbjct: 74  DDEDSELADVQGGQLKESDAKEGGRAADPIFGRRRRYYYRRRRRRR 119


>SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)
          Length = 625

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +3

Query: 51  AQSTSNTHNFMYSPDNNLEVVIIT--NSDGDHDGYLELTAAAKIMSPFISNGGSTVWTN 221
           +++T NT++F +SP ++++    T   S G + G +  +   +++S  + +  S + TN
Sbjct: 65  SKTTVNTNSFAHSPSSDIKSPASTMGGSGGSYCGIVANSCDGEVVSSSVDSPHSNIHTN 123


>SB_15832| Best HMM Match : zf-C2H2 (HMM E-Value=7e-35)
          Length = 337

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +3

Query: 51  AQSTSNTHNFMYSPDNNLEVVIIT--NSDGDHDGYLELTAAAKIMSPFISNGGSTVWTN 221
           +++T NT++F +SP ++++    T   S G + G +  +   +++S  + +  S + TN
Sbjct: 208 SKTTVNTNSFAHSPSSDIKSPASTMGGSGGSYCGIVANSCDGEVVSSSVDSPHSNIHTN 266


>SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +3

Query: 6   LFLSGCYKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSP 185
           L L G    G M  +A +T++T +       +L    +    G  +   +L  A K+M+ 
Sbjct: 240 LELQGKKCPGEMSEEASATTDTESIKSKKSGDLTSSKVNQQVGSSNEDEKLNKALKLMNV 299

Query: 186 FISNGGS 206
             S GGS
Sbjct: 300 IASKGGS 306


>SB_18989| Best HMM Match : TLP-20 (HMM E-Value=1.9)
          Length = 487

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 48  DAQSTSNTHNFMYSPDNN--LEVVIITNSDGDHDGYLELTAAAKI 176
           D + T +  N   SP+    ++  ++TN+DGD DG   ++   KI
Sbjct: 149 DTKLTEDETNGTQSPNKRQKMDNEVMTNNDGDEDGKGSVSVDGKI 193


>SB_28016| Best HMM Match : F-box (HMM E-Value=0.15)
          Length = 397

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
 Frame = +3

Query: 102 LEVVIITNSDGDH---DGYLELTAAAKIMSPFISNGGSTVW 215
           L V I  NSD  H   D  L LT  +      IS GG  VW
Sbjct: 239 LSVRIQPNSDTGHNPPDSLLHLTCLSTWCKGVISKGGKKVW 279


>SB_4849| Best HMM Match : Pox_H7 (HMM E-Value=1.8)
          Length = 189

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 29  KRDYENGRPVDIEHAQLHVFSRQQSGGGHHYQFGRR 136
           K+  E    + I+ A++H  + +  GGG  Y FG+R
Sbjct: 111 KKKGERNLKIYIKKAKVHRGTGRGHGGGGSYMFGKR 146


>SB_50109| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-10)
          Length = 315

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 53  PVDIEHAQLHVFSRQQSGGGHHY 121
           P+++E     +FSRQ+ GG +++
Sbjct: 207 PIELERLAFLLFSRQKEGGAYNH 229


>SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 152 QIAIVIAVRIGNDDHLQIVVGRIHEVVRVRC 60
           +I I +A+  GND+ + +++G   +  R  C
Sbjct: 182 RITIKMAMMNGNDNRMIVIIGNFKQTERSEC 212


>SB_23331| Best HMM Match : FAINT (HMM E-Value=3.4)
          Length = 204

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 24  YKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGG 203
           Y N     D +S S+T   +Y   N  ++V    SDG       ++  ++I+ P  S+GG
Sbjct: 107 YPNTSDGGDIRSISDTSQIVYPNTNTSQIVYPNISDG--GDIRSISDTSQIVYPNTSDGG 164


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 9    FLSGCYKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDH 140
            +L+   K G    +A    + ++++YSPD+     +   SD +H
Sbjct: 3476 YLADAGKPGTDTVNAAGEDHQYDYVYSPDDQGMTSLPPESDAEH 3519


>SB_6066| Best HMM Match : F5_F8_type_C (HMM E-Value=2.3e-18)
          Length = 179

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 203 TAVANKR*HDFGGGG*FQIAIVIAVRIGN-DDHLQIVVGRIHEVVRV 66
           ++V NK    F       +A   A ++ N +D+LQI +GR+H++  V
Sbjct: 46  SSVYNKNFQPFNARYSDGLAAWCAEKVDNPNDYLQIDLGRVHQICAV 92


>SB_45686| Best HMM Match : T-box (HMM E-Value=0)
          Length = 947

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 99  NLEVVIITNSDGDHDGYLELTAAAK 173
           + E V +TN+D DH+G+L L +  K
Sbjct: 705 SFEKVKLTNNDTDHNGHLILHSMHK 729


>SB_7272| Best HMM Match : TP2 (HMM E-Value=3.1)
          Length = 122

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 123 NSDGDHDGYLELTAAAKIMSPFISNGGSTV 212
           N D D D   EL+   K +SP  S+ G  V
Sbjct: 70  NDDSDRDNNAELSKETKNLSPRTSSQGKKV 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,324,185
Number of Sequences: 59808
Number of extensions: 183090
Number of successful extensions: 333
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 16,821,457
effective HSP length: 67
effective length of database: 12,814,321
effective search space used: 294729383
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)