Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8o14
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    28   0.89 
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    27   2.7  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.2  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.2  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   6.2  
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    25   8.3  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   8.3  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   8.3  

>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
 Frame = +3

Query: 123 DLRQKLYALEDELWRNVSDPMWRQSDLGGDVELTKAFVALDELIQAVPRSRRPPLNSW-I 299
           DL++ L  L DE W N+ +P              + F A  + + A  R+    ++++ +
Sbjct: 132 DLKRGLSTLTDEDWNNIPEPGDLTRKKRTKQPRRERFYATSDFVLASARNENQAISNFAV 191

Query: 300 WTNAIEKMQIIDGHYKYFAEFARTQSRPGAVPAPVREWMDLTEAVLMDPKSSVT--NSM 470
            T A  +   ++G    F E    + +   +    +   +LT    +DPK  +T  NSM
Sbjct: 192 DTQAGTETPDMNGTKTNFVEIGAARDKVLGIKL-AQASSNLTSPSTIDPKGYLTSLNSM 249


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 348 YFAEFARTQSRPGAVPAPVREWMDLTE 428
           YF +  R QS P  +P PV   + LT+
Sbjct: 291 YFPQHRRFQSAPAPIPRPVSTLIPLTQ 317


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 405  REWMDLTEAVLMDPKSSVTNSMKKLGELMSHGEAVTYRLVMLQE 536
            R  MD  + +L+D K++VTN    +G  +    A T  L  L+E
Sbjct: 1096 RMTMDYCKRMLLDRKANVTNVFNTIGLPIHQQMAATIFLENLKE 1139


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 451 DLGSISTASVRSIHSRTGAGTAPGRDCVLANSAKY 347
           DL  I+ + + ++ S T    A   +CVL+N  KY
Sbjct: 415 DLSDIADSILLNMFSPTSKNRATNINCVLSNLGKY 449


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 343 TNTLPSSRGRSHGPALFRRQ 402
           T   PS  GRSHG + FRR+
Sbjct: 328 TTARPSIFGRSHGTSQFRRR 347


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 288 NSWIWTNAIEKMQIIDGHYKYFAEFARTQSRPGAVPAPVREWMD 419
           N W + +  +  ++++    +  E+    SRP  +   VREW+D
Sbjct: 168 NPWFFGSEDDYTRMLE-EAGFHVEYVENISRPTLLNKDVREWLD 210


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -2

Query: 250 NSSSATKAFVSSTSPPKSDCLHIGSDTFLHNSSSKAYSFCRKSST 116
           +SSS++ +  SS+S   S  + I S T   +SSS + S    SS+
Sbjct: 188 SSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSS 232


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 365 RELGKVFVMSVDDLHFLDSVRPNPRVERGPSTPRYGLNQLV 243
           RE+ ++F   +  LHF+D + P P       T    +NQ V
Sbjct: 235 REVSRIFHQDI--LHFIDYITPTPEEHAVRKTLVSRINQAV 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,476
Number of Sequences: 5004
Number of extensions: 47032
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)