Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8o09
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 42 7e-05
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 33 0.053
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.87
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|... 28 1.5
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 28 1.5
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 27 2.0
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 27 2.0
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 27 2.0
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 27 2.6
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 27 2.6
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 27 3.5
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 27 3.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.5
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 3.5
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 27 3.5
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 26 4.6
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 4.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 4.6
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.1
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 26 6.1
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 26 6.1
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 8.1
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 8.1
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 25 8.1
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 8.1
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi... 25 8.1
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 25 8.1
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 8.1
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 42.3 bits (95), Expect = 7e-05
Identities = 23/95 (24%), Positives = 42/95 (44%)
Frame = +1
Query: 250 NKPKRPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDL 429
N PKR ++ F F + R + NP + + + K W++L + ++ ++D
Sbjct: 14 NTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKARQDK 73
Query: 430 EDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEK 534
E Y + + Y+T L +K A AKE+
Sbjct: 74 ERYERERKEYDTKLANGEKTGKASAPAAAAAAKEE 108
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 32.7 bits (71), Expect = 0.053
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 352 AWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEE----MA 519
AW + + +L E + + E ++++ED N+ Y +S + Q +R EE A
Sbjct: 143 AWYAFNSHELSDEENSDSSNEREEEVEDDNRSVESYSSS--DYQARSRRRFSEETTQRRA 200
Query: 520 QAKEKRKLKAEYKEL 564
+ KEKRK + E+ +
Sbjct: 201 EIKEKRKKRKEFASI 215
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.7 bits (61), Expect = 0.87
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +1
Query: 403 MAKEYQKDLEDYNKIKAMYE--TSLTEEQKADIKRVKEE 513
M+++YQK LED K K+ YE +L +++ + K ++E
Sbjct: 464 MSEQYQKSLEDCQKAKSRYEQLETLFKDKCTENKHYEQE 502
>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 161
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 409 KEYQKD--LEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYK 558
K++Q+ L D + +K + EQ D+KRV EE+++ ++K+ L+++ K
Sbjct: 102 KDWQEGELLPDGSNVKTLSRYPKVLEQ-VDMKRVNEELSKLQDKQILESQQK 152
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -2
Query: 653 DIPFSVFPXILSFLDCMYIKYEDIGFLGRPSSLYSAFNFLFSLACAISSLTLFISAF 483
D+ F+V P L C + Y DI +YS F +L A+ TL IS+F
Sbjct: 414 DVEFNVRPCAEKLLKCFFDAYGDIIVSPFKDMIYSVFECPKTLTQAVQQDTL-ISSF 469
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 27.5 bits (58), Expect = 2.0
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Frame = +1
Query: 241 LGLNKPKRPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQ-MAK-- 411
+GL+K P F F+S +RP L A P A L K Q AK
Sbjct: 772 IGLDKNLN--APKFSFISNVRPKLFAYPPKSVQPTAKTVQKVETAVLSTTVKAQARAKRA 829
Query: 412 EYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQ 522
E +K + N + + TEE++A + EE +Q
Sbjct: 830 EREKASKGSNDDEMKIDKKTTEEKEATPMEMDEEKSQ 866
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = +1
Query: 376 QLDMETKTQMAKEYQKDLEDY---NKIKAMYETSLTEEQKADIKRVKEEMAQA--KEKRK 540
++D+E + K+Y+K D N +A E + + + +KR K+E +A +E +K
Sbjct: 122 KIDVEETEEKVKQYEKQNRDSIAANSARAAAEARILAQNEILLKRQKQEAREAAIREHQK 181
Query: 541 LKAEYKEL 564
K +++
Sbjct: 182 EKERREQV 189
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +1
Query: 340 KEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMA 519
+E A S W + + T+ + +K Y K A Y ++ +E+ KR K +
Sbjct: 426 REIPASDSIAWHSISKKLGTKSPESCRKQ---YEKTIASYSSNQRQEEDQGKKRKKRKKK 482
Query: 520 QAKEKRK 540
++K KRK
Sbjct: 483 KSKGKRK 489
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 310 LLAKNPGISSKEAIAWTSKHWQQL--DMETKTQMAKEYQKDLEDYNK 444
LL KN IS K + S ++QL ++ K +K YQK LED N+
Sbjct: 803 LLPKN--ISMKSYHSLFSSQFRQLFEELSNKETQSKLYQKRLEDLNE 847
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 400 QMAKEYQKDLEDYNKIKAMY 459
++A ++ +DL DYN IK +Y
Sbjct: 26 EVAVDFDRDLSDYNTIKGVY 45
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +1
Query: 403 MAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKP 582
+ K+ ++ ++ A E +++K ++ + E A E RK + E ELGR +
Sbjct: 21 LKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDA-EYRKAEREQIELGRKARA 79
Query: 583 MSSYFI 600
+Y++
Sbjct: 80 EGNYYV 85
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 26.6 bits (56), Expect = 3.5
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = +1
Query: 277 FFKFMSQMR--PALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLE--DYNK 444
F +MS+ R +L+ K +A + K W+ ++ K A Y+K + +N+
Sbjct: 287 FTNWMSKRRRNESLIQKANVFFQHSVLAHSFKTWKA-NLSIKNA-ATLYEKKVVFMSFNR 344
Query: 445 IKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAE 552
A YE+ + + QKA++ K + A K KL+ E
Sbjct: 345 WHANYESHVLDLQKAELFSQKAYYSIALHKWKLRIE 380
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 3.5
Identities = 25/107 (23%), Positives = 38/107 (35%)
Frame = +1
Query: 256 PKRPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLED 435
P +PL P + ++P L N IA Q E +
Sbjct: 1728 PYQPLQPASAHLPNLQPTLAPINQNAYVPSNIAPAMGAMQSAPSAEAVAAPSESL----N 1783
Query: 436 YNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYKELGRPK 576
NK ++ + AD+ R +EE + K+K K AE + G K
Sbjct: 1784 LNKDRSQQAKQAAAQNVADLVRQEEEKEKQKQKAKKNAESGKKGGAK 1830
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/83 (22%), Positives = 41/83 (49%)
Frame = +1
Query: 331 ISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKE 510
I +E ++ + D+E + + + + + + + + A E S E D + +E
Sbjct: 604 IEGQEEVSQDDEEGDFEDLEDE-ENSSDNEMEESSGSSVTAENEESADE---VDFQTERE 659
Query: 511 EMAQAKEKRKLKAEYKELGRPKK 579
E A+ KE+ +L+ E ++ G P+K
Sbjct: 660 ENARKKEELRLRFEEEDRGDPEK 682
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 3.5
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Frame = +1
Query: 145 FLGNYKTVLCGRVNWITPIQSCDYTKKSAEQRLGLNKPKRPLT-PFFKFMSQMRPALLAK 321
+LGN K + + + TKKS++QRL +N L + +++ + + +
Sbjct: 119 YLGNGKPIEASQTEESSSTPPSPATKKSSKQRLTMNSRDAALDYEEYLAIAKEKSLIPRR 178
Query: 322 NPGISSKEAIA--WTSKHWQQLDMETKTQMAKEYQKDLEDYNKIK----AMYETSLTEEQ 483
+ G +S ++++ Q ++ K ++ +E + LED + K ETS T
Sbjct: 179 SRGRTSSKSLSPPAPQDESQGTEINLKQKIEEENDEILEDSKESKDENEENKETSTTNVA 238
Query: 484 KADIKRVK-----EEMAQAKEKRKLKAEYKE 561
+ D + EE+A +EK +K E E
Sbjct: 239 ETDAPEEETVDTVEEIAD-EEKHSVKEESGE 268
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 26.2 bits (55), Expect = 4.6
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 409 KEYQKDLEDYNKIKAMYETSLTEEQK-ADIKRVKEEMAQAKEK-RKLKAEYKELGRPKKP 582
+E DLED+ ETS +EE++ ++ + ++E K K RK K + + R K+
Sbjct: 220 EEEISDLEDWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRKKRA 279
Query: 583 MSSYFIYMQSRKD 621
+ Y Q R++
Sbjct: 280 PHIHIEYEQEREN 292
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +1
Query: 409 KEYQKDLEDYNKIKAMYE 462
KEY+ L+DYN+++A Y+
Sbjct: 1063 KEYKSLLDDYNQLRARYK 1080
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Frame = +1
Query: 460 ETSLTEEQKADIKRVKEEMAQAKEKRKLKAE-------YKELGRPKKPM 585
ETSLTEEQK ++ +++ A + + E ++L +P +P+
Sbjct: 807 ETSLTEEQKIQLEEARKQRKAADDAARAAIEKYTSIPSLRDLHKPTRPL 855
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 436 YNKIKAMYETSLTEEQKADIK-RVKE--EMAQAKEKRKLKAEYKELGRPKKP 582
Y K K+ + + Q K R KE E+A +++R+L A KEL +P
Sbjct: 190 YGKKKSTEPLTKRQRQNQQKKLRAKEMQELADEEQRRRLAAHRKELHEANRP 241
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 262 RPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYN 441
RP F + + LL NP I++ + + W+ E+K ++ Y K E Y
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN---ESK-EVRMRYFKMSEFYK 160
Query: 442 -KIKAMYETSLTEEQKADIKR 501
+ + MY + +K +KR
Sbjct: 161 AQHQKMYPGYKYQPRKNKVKR 181
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 262 RPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYN 441
RP F + + LL NP I++ + + W+ E+K ++ Y K E Y
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN---ESK-EVRMRYFKMSEFYK 160
Query: 442 -KIKAMYETSLTEEQKADIKR 501
+ + MY + +K +KR
Sbjct: 161 AQHQKMYPGYKYQPRKNKVKR 181
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 382 DMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQ 483
D + + KE +DLE N + A E +L EEQ
Sbjct: 1608 DAKLMEKTLKEVIEDLEKNNSLHAYEEEALNEEQ 1641
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.4 bits (53), Expect = 8.1
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Frame = +1
Query: 379 LDMETKTQMAKEYQ-------KDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKR 537
+D+E + +A+E Q +D + YN + +M SLT E+ ++ + K+E+ A+
Sbjct: 1123 VDLEVENALAEEEQSGDVSQDEDSDAYNYLLSMPLWSLTYERYVELLKKKDEV-MAELDA 1181
Query: 538 KLKAEYKEL 564
+K KEL
Sbjct: 1182 LIKKTPKEL 1190
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +1
Query: 376 QLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEY 555
+++ E ++ ++KE + E + ET TEE K + AKE+ KL
Sbjct: 96 EIEKENESIISKETSQAPETSTGAEEHQET--TEESKQSVSNEVSSPDVAKEQEKLIQRA 153
Query: 556 KELGRP 573
K G P
Sbjct: 154 KRFGIP 159
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 8.1
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +1
Query: 202 QSCDYTKKSAEQR--LGLNKPKRPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQ 375
+S DY+K E+ LGL++ + + + G+S +E IA+ + Q
Sbjct: 535 KSSDYSKNEVEREIMLGLDQIAQERREKMEARQKFEQHFGEGLVGLSEEEIIAYVTMLSQ 594
Query: 376 QLDMETKTQMAKEYQKDLEDYNKIKAMYETSL 471
+ + + Q++ + K ED+ + +SL
Sbjct: 595 EEEAKRMVQLSMDVDKIEEDFKENDEQATSSL 626
>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 412 EYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEE-MAQAKEKRKLKAEYKELGR 570
EY DLE+ K+K L ++ D ++ ++ + +A++ + +E K++ R
Sbjct: 99 EYLNDLEELKKLKGQKVIRLVHDESGDEEQNDDDGLTEAQDAVQKGSELKKMCR 152
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 626 ILSFLDCMYIKYEDIGFLGRPSSLYSAFNFLFSLAC--AISSLTLFISAFCSSV 471
+L+ L Y+KY+D F ++ ++ F F + L C A+ LT F + +V
Sbjct: 86 VLNVLAICYLKYKDAFFKNYGAAEWTLFGF-WCLVCTLALIFLTYFYETWTKAV 138
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 400 QMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKL 543
+++++ +DL D K++ ETS T + ++ E++ Q K+ RKL
Sbjct: 679 EISRKMFEDLADL-KVRRNPETSRTVMDRRTFQQTLEKLMQEKKVRKL 725
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,548
Number of Sequences: 5004
Number of extensions: 52551
Number of successful extensions: 187
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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