Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8o09
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.53 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 52  LNIFLFININDKL*LK*SMTTYTQLQRLSNYFLGNYKTV 168
           LN+  FIN NDK      +TT   L  +  Y  G +K +
Sbjct: 79  LNVLYFINKNDKYEENTILTTMPLLINVVKYLGGKHKFI 117


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +1

Query: 316 AKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKAD 492
           +K P  ++ +   W ++ WQ           +  QK+L D  K        L EE+KAD
Sbjct: 290 SKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGK--------LGEEEKAD 340


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +1

Query: 316 AKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKAD 492
           +K P  ++ +   W ++ WQ           +  QK+L D  K        L EE+KAD
Sbjct: 290 SKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGK--------LGEEEKAD 340


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +1

Query: 316 AKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKAD 492
           +K P  ++ +   W ++ WQ           +  QK+L D  K        L EE+KAD
Sbjct: 290 SKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGK--------LGEEEKAD 340


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
 Frame = +1

Query: 415 YQKDLEDYNKIKAMYETSLTEEQKAD--IKRVKEEMAQAKEKRKLKAEYKELGRPKKPMS 588
           +Q     Y++ ++       E +K D   +++  E  +  E+R  +  Y    R ++  S
Sbjct: 213 FQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKEKLLEERTSRKRYSR-SREREQKS 271

Query: 589 SYFIYMQSRKDNIXGKTLKGISRDSQER 672
               Y   R+    GKT K  SRD  ER
Sbjct: 272 ----YKNEREYRKYGKTSKERSRDRMER 295


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 257 GLFRPNLCSADFFV*SHDCIGVIQFTLPHRTVL 159
           GL+    CS D+F  S  C+  I   +    VL
Sbjct: 14  GLYYHQRCSRDWFRISAGCVSRISNRISRNRVL 46


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 373 QQLDMETKTQMAKEYQKDLEDYN 441
           Q + ++   Q  +EY ++LED++
Sbjct: 284 QNVFVKNSGQWLREYDRELEDFD 306


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,570
Number of Sequences: 438
Number of extensions: 3906
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)