Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8o08
(676 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33835| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0) 29 3.4
SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3) 29 3.4
SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24) 28 6.0
SB_36256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 28 7.9
>SB_33835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/65 (23%), Positives = 33/65 (50%)
Frame = +2
Query: 449 YMRQSKIYRRFHKRHATRYTQRLRNYKKHSRHHKPEHVLFACVARRIAFFRRDQRPNASR 628
Y R+ ++Y R ++ +A +Y R Y+ ++R ++ + AR+ + R R +
Sbjct: 85 YARRYRLYARQYRLYARQYRLYDRQYRLYARQYRLYDRQYRLYARQYRLYARQYRVIRAD 144
Query: 629 WCWRS 643
+ WR+
Sbjct: 145 FFWRA 149
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +2
Query: 449 YMRQSKIYRRFHKRHATRYTQRLRNYKKHSRHHKPEHVLFACVARRIAFFRRDQRPNASR 628
Y + ++Y R ++ +A +Y R Y+ + R ++ + ARR + R R A +
Sbjct: 43 YALKYRLYARQYRLYARQYRLYARQYRLYDRQYRLYARQYRLYARRYRLYARQYRLYARQ 102
Query: 629 W 631
+
Sbjct: 103 Y 103
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 449 YMRQSKIYRRFHKRHATRYTQRLRNYKKHSRHHKPEHVLFACVARRI 589
Y RQ ++Y R ++ + +Y R Y+ ++R ++ F ARRI
Sbjct: 106 YDRQYRLYARQYRLYDRQYRLYARQYRLYARQYRVIRADFFWRARRI 152
>SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1203
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +3
Query: 174 DAYHD-DGWFICNSHLIKRFKMSKMVLP--IFDEDDNQFKMTIARHLVGNKER 323
DA D GW++ L+K+F+ S+M + D+D ++ + L NKE+
Sbjct: 186 DASSDFKGWYLLKKQLLKKFENSRMATKKLVSDDDGTPYRKKMKLSLKVNKEQ 238
>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 1277
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 132 SFDACITYKSPC-SPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDEDDNQFKMTIARHLV 308
SFD+ I +P ++ H G I S + S V IFD+DD +T+ R+
Sbjct: 316 SFDSGIVQNNPSFKSNSLHSVGQRITTSTITP----STTVNLIFDDDDGDGGLTVTRYAS 371
Query: 309 GNKERGI 329
GN G+
Sbjct: 372 GNAFSGV 378
>SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)
Length = 321
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 186 DDGWFICNSHLIKRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSA 353
DD F NS KR + L +F + F +T A ++G+K R + R+LIP +
Sbjct: 141 DDAGFGPNSST-KRRPTFPVDLNLFQDLYMHFNLTEANLVLGSKVRNVLRVLIPKS 195
>SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +2
Query: 449 YMRQSKIYRRF---HKRHATRYTQRLRNYKKH 535
YMR Y R + RH TRYT+ + +Y +H
Sbjct: 7 YMRHVTRYTRHFTRYMRHVTRYTRHVTHYTRH 38
>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
Length = 661
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 449 YMRQSKIYRRFHKRHATRYTQRLRNYKKHSRHHKP 553
YMRQ Y R H + ++ +R R+Y + H P
Sbjct: 609 YMRQPTYYMRQHTHYMRQHLRRPRHYMRQLYTHYP 643
>SB_36256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Frame = +3
Query: 381 NSMMQAEQLIFHLIYNNEEAVNVICDNLKYTE---GFTSGTQRVIHSVYATTRSILDTTN 551
NSM+ +E + + +YNN++ VN + + E G + + V T + N
Sbjct: 23 NSMVASELMEIYSMYNNDKDVNKVISLIPEVERGLGSIITSNMSLSDVRETLGQLEVLLN 82
Query: 552 PNTFCSRVSRDELRFFDVTNA----RTHRGGVGDQL 647
+ + D+ R F+ TN R RGG QL
Sbjct: 83 SSMDSRLICADKPRLFNQTNQAYRYRRPRGGARYQL 118
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 467 IYRRFHKRHATRYTQRLRNYKKHSRHHKPEH 559
I R H++H R+ + +++ HH P H
Sbjct: 185 ILRHRHRQHYNRHRRHHHHHRHRHHHHHPNH 215
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,786,580
Number of Sequences: 59808
Number of extensions: 442169
Number of successful extensions: 1215
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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