Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8o06
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    56   4e-09
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    29   0.68 
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   3.6  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.8  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    25   8.4  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    25   8.4  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
 Frame = +3

Query: 384 DSTVTGLLPGNFKVDCD---EAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQ 554
           +S ++ L  G  + DC    +    +AV+R++F   +F L +A I+    +       IQ
Sbjct: 67  NSKLSKLSAGYLQFDCQNDGKCYSVIAVHRLSFTLVMFHLFLAFILSLCNTRSRVAIKIQ 126

Query: 555 NGFWAIKYLLVXXXXXXXXXXXXXXXASTWMVFGMIGGFCYIVIQLILIIDFAHSWAE 728
           NG W  K +L                +    +  ++G   +IV  L+L++DFAH+WAE
Sbjct: 127 NGLWPFKIVLWFVLGIFSFFIPTKFLSFWGNIISVMGSALFIVYGLMLLVDFAHTWAE 184


>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -3

Query: 728 FSPGMCKINDKNELDNNVAEASNHSKHHPCRSKLTSWDEECSDNATNNQ*IFDGPKTILN 549
           FS G  +I   N L NNV E +N +  + C+     +  +C    TN+    D P+T  N
Sbjct: 49  FSTGDIRIGAYNYLVNNVTEINNDTDAYLCQLLTGQYTTDCYIFDTNSD---DKPET-FN 104

Query: 548 SS 543
           SS
Sbjct: 105 SS 106


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -3

Query: 182  TKAQYCTHF*FLYLTLFVLIVMFVLCTTIYIPNNKYLYFDIIIRTYKYSDFL-YLSLNSV 6
            T   + TH+ + ++T+F L    V+C  IY P +++ + D  +    Y +FL +LS  + 
Sbjct: 1434 TMTVWTTHYVYFWVTMFAL----VICPFIYNP-HQFSFVDFFV---DYREFLRWLSRGNT 1485

Query: 5    K 3
            K
Sbjct: 1486 K 1486


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 563 LGHQIFIGYWWHYRSILHPRRSICFDMDGV 652
           L HQ F  +W+  R +++P R +C+ +  V
Sbjct: 544 LYHQSFSSHWFISRLLINPIRMLCWHITDV 573


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 210 HSNTLAVLQNKGPILHPFLVFISHFVCVDCDVCFMYY 100
           HS+  A   +  P+   FL FIS FV     VC++ Y
Sbjct: 88  HSSGTADNSSTSPLKKAFLSFISIFVLNVPAVCYLTY 124


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 210 HSNTLAVLQNKGPILHPFLVFISHFVCVDCDVCFMYY 100
           HS+  A   +  P+   FL FIS FV     VC++ Y
Sbjct: 88  HSSGTADNSSTSPLKKAFLSFISIFVLNVPAVCYLTY 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,260
Number of Sequences: 5004
Number of extensions: 65593
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)