Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8o06
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106...    58   5e-09
03_06_0331 - 33181757-33181795,33182325-33182453,33182941-331829...    30   2.2  
09_04_0452 - 17710180-17710968                                         28   6.6  
08_02_1345 - 26286448-26286679,26287483-26288038,26288068-262883...    28   6.6  
11_03_0173 + 11162708-11163010                                         28   8.8  
06_03_0854 + 25400855-25403741,25406174-25407708                       28   8.8  

>02_05_1040 -
           33709588-33709880,33709960-33710200,33710498-33710672,
           33710781-33710892,33711906-33712145,33712253-33712436
          Length = 414

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 27/92 (29%), Positives = 45/92 (48%)
 Frame = +3

Query: 453 AVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVXXXXXXXXXXXXXXX 632
           AV R++    +FF ++A+IM G+K  KDPR  I +G W  K +                 
Sbjct: 79  AVLRVSLGNFVFFTILAIIMAGIKDQKDPRDKIHHGGWMAK-IFCWVVIVFLMFFVPNGV 137

Query: 633 ASTWMVFGMIGGFCYIVIQLILIIDFAHSWAE 728
            S +      G   ++++Q++L++DF H W E
Sbjct: 138 VSFYESISKFGSGLFLLVQVVLLLDFVHGWNE 169


>03_06_0331 -
           33181757-33181795,33182325-33182453,33182941-33182967,
           33183459-33183545,33183827-33183975,33185467-33185521,
           33185596-33187584,33188705-33188782
          Length = 850

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/76 (23%), Positives = 31/76 (40%)
 Frame = -1

Query: 415 FPGNSPVTVLSVAFVQNGSF*SSLCNPGAKVIQHTIVTSTSISAYIRREEVELVQDGHAE 236
           FPG SP+   +  F QN    + L +P      +   ++ S  A I+RE++   +     
Sbjct: 472 FPGESPLQCSATDFGQNSEHNTCLVSPATSPASNVEHSNVSDKALIKREDMTNTEPSSQP 531

Query: 235 QHSEQAVLPQQHASCA 188
            +       Q+  S A
Sbjct: 532 MNLSPPTSEQKEGSTA 547


>09_04_0452 - 17710180-17710968
          Length = 262

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +3

Query: 462 RITFAT--CLFFLLMALIMIGVKSSKDPRAGIQNG-FWAIKYLLV 587
           R+T AT   +  L +  +++G+  SKD  AG+ NG +W   +L++
Sbjct: 150 RLTAATLNAVALLTIGAVVLGLHVSKDRPAGVTNGKYWMGFFLII 194


>08_02_1345 -
           26286448-26286679,26287483-26288038,26288068-26288358,
           26288953-26290516
          Length = 880

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 710 KINDKNELDNNVAEASNHSKHHPCRSKLTSWDEEC 606
           +++ ++++D   AE +   K   CR +L+S D EC
Sbjct: 595 EVSSEHKIDTFSAEVTTEDKGKTCRYRLSSIDYEC 629


>11_03_0173 + 11162708-11163010
          Length = 100

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -3

Query: 701 DKNELDNNVAEASNHSKHHPCRSKLTSWDEECSDNATNNQ*IFDGPKTILNSSSWIFR 528
           ++ E  ++ AE SN +        LT W   C D       IFDG  T +N++ W+ R
Sbjct: 7   EEEEDGSHSAEVSNDAARVVRGMTLTRWTSMCLD-------IFDGSGTPVNAADWMRR 57


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = -1

Query: 667  PPIIPNTIHVEAN*PPGMKNAPIMPPITNKYLMAQKPF*IPALGSLEDLTP 515
            PP+   T  V A  PP   NA I PP +        P   P+L +LE L P
Sbjct: 1017 PPLPVPTPAVHAPAPPVEPNAVISPPSSALAPAYAVPAPAPSLAALEALAP 1067


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,355,843
Number of Sequences: 37544
Number of extensions: 396260
Number of successful extensions: 1060
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)